miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 3' -62.9 NC_006151.1 + 29433 0.8 0.080026
Target:  5'- gGCCGCggGGGGCgGCGGGGAGAg--- -3'
miRNA:   3'- gCGGUGa-CCCCGgCGCCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 99674 0.75 0.168441
Target:  5'- aGCCGCUGGGGCCuGCgcgccgacggcgccGGGGAGAc--- -3'
miRNA:   3'- gCGGUGACCCCGG-CG--------------CCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 23002 0.74 0.210607
Target:  5'- gGCCGCgcgggUGGGGgCGCGGGGGuGGUGg- -3'
miRNA:   3'- gCGGUG-----ACCCCgGCGCCCCU-CUACag -5'
29548 3' -62.9 NC_006151.1 + 42858 0.73 0.231929
Target:  5'- cCGCUGCacgacgauggucgagGGGGCCGCGaGGGAGAggggGUUa -3'
miRNA:   3'- -GCGGUGa--------------CCCCGGCGC-CCCUCUa---CAG- -5'
29548 3' -62.9 NC_006151.1 + 5081 0.73 0.242413
Target:  5'- gGCCGC-GGGGCCGCGGcgggcgccggcGGAGAcgGUg -3'
miRNA:   3'- gCGGUGaCCCCGGCGCC-----------CCUCUa-CAg -5'
29548 3' -62.9 NC_006151.1 + 122954 0.72 0.284461
Target:  5'- gCGCCGCgGGGGgCGCGGacgccggcgacGGGGgcGUCg -3'
miRNA:   3'- -GCGGUGaCCCCgGCGCC-----------CCUCuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 5239 0.71 0.302829
Target:  5'- gCGCCGCgcggcggcggcgGGGGCC-CGGGGGGcgGa- -3'
miRNA:   3'- -GCGGUGa-----------CCCCGGcGCCCCUCuaCag -5'
29548 3' -62.9 NC_006151.1 + 23405 0.71 0.324922
Target:  5'- gCGCCagcGCUGGuggucgccGGCCGUGGGGGcGAUGg- -3'
miRNA:   3'- -GCGG---UGACC--------CCGGCGCCCCU-CUACag -5'
29548 3' -62.9 NC_006151.1 + 34638 0.7 0.339328
Target:  5'- gCGaCCGCgGGGGUCGCGGGaGGGucucggggGUCu -3'
miRNA:   3'- -GC-GGUGaCCCCGGCGCCC-CUCua------CAG- -5'
29548 3' -62.9 NC_006151.1 + 30663 0.7 0.339328
Target:  5'- gGCCGCgcugguuccGGGaaGCCucccccggcggGCGGGGGGGUGUCg -3'
miRNA:   3'- gCGGUGa--------CCC--CGG-----------CGCCCCUCUACAG- -5'
29548 3' -62.9 NC_006151.1 + 10422 0.7 0.376548
Target:  5'- aCGCCGCggGuGGGCCgaggccgGCGGGGAGGg--- -3'
miRNA:   3'- -GCGGUGa-C-CCCGG-------CGCCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 126074 0.69 0.384475
Target:  5'- uGCCACgGGGGCCGUgaucucggccgucGGcGGcauGGUGUCc -3'
miRNA:   3'- gCGGUGaCCCCGGCG-------------CC-CCu--CUACAG- -5'
29548 3' -62.9 NC_006151.1 + 63507 0.69 0.385274
Target:  5'- gGCCAggugGGGGCgCGCGGGGcg--GUCg -3'
miRNA:   3'- gCGGUga--CCCCG-GCGCCCCucuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 76678 0.69 0.401477
Target:  5'- gGUCGCUGGGGagcaGgGGGGAGA-GUg -3'
miRNA:   3'- gCGGUGACCCCgg--CgCCCCUCUaCAg -5'
29548 3' -62.9 NC_006151.1 + 32779 0.69 0.418107
Target:  5'- aCGCCGC---GGCCGCGGGGGGccGa- -3'
miRNA:   3'- -GCGGUGaccCCGGCGCCCCUCuaCag -5'
29548 3' -62.9 NC_006151.1 + 30807 0.69 0.426577
Target:  5'- gGCCcCgGGGGCaCGCGGGcGGGAggaGUUg -3'
miRNA:   3'- gCGGuGaCCCCG-GCGCCC-CUCUa--CAG- -5'
29548 3' -62.9 NC_006151.1 + 112033 0.68 0.435149
Target:  5'- gGCgggaGCUGGGGCCgGCGGGcGGGcgG-Cg -3'
miRNA:   3'- gCGg---UGACCCCGG-CGCCC-CUCuaCaG- -5'
29548 3' -62.9 NC_006151.1 + 2102 0.68 0.435149
Target:  5'- gGCC-CgagcGGGCCGCGGGGccGGccGUCg -3'
miRNA:   3'- gCGGuGac--CCCGGCGCCCC--UCuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 8486 0.68 0.452586
Target:  5'- gGUCGgacGGGGCgGgCGGGGAgGGUGUCg -3'
miRNA:   3'- gCGGUga-CCCCGgC-GCCCCU-CUACAG- -5'
29548 3' -62.9 NC_006151.1 + 103806 0.68 0.461447
Target:  5'- gGCCGCgcugucGGcGGCCGUGGcggcggccguGGAGAUGcUCg -3'
miRNA:   3'- gCGGUGa-----CC-CCGGCGCC----------CCUCUAC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.