miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 3' -62.9 NC_006151.1 + 713 0.67 0.535304
Target:  5'- cCGUCGCaccgGGGGuCCGCGGGcGGGGg--- -3'
miRNA:   3'- -GCGGUGa---CCCC-GGCGCCC-CUCUacag -5'
29548 3' -62.9 NC_006151.1 + 2102 0.68 0.435149
Target:  5'- gGCC-CgagcGGGCCGCGGGGccGGccGUCg -3'
miRNA:   3'- gCGGuGac--CCCGGCGCCCC--UCuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 5038 0.67 0.525818
Target:  5'- gGCCGg-GGaGGCCGCGGcGGAGGa--- -3'
miRNA:   3'- gCGGUgaCC-CCGGCGCC-CCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 5081 0.73 0.242413
Target:  5'- gGCCGC-GGGGCCGCGGcgggcgccggcGGAGAcgGUg -3'
miRNA:   3'- gCGGUGaCCCCGGCGCC-----------CCUCUa-CAg -5'
29548 3' -62.9 NC_006151.1 + 5239 0.71 0.302829
Target:  5'- gCGCCGCgcggcggcggcgGGGGCC-CGGGGGGcgGa- -3'
miRNA:   3'- -GCGGUGa-----------CCCCGGcGCCCCUCuaCag -5'
29548 3' -62.9 NC_006151.1 + 5313 0.68 0.474003
Target:  5'- uGCUGCUGGagcugcugaagccgcGGCCGCGGcGGAGGg--- -3'
miRNA:   3'- gCGGUGACC---------------CCGGCGCC-CCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 5429 0.67 0.497763
Target:  5'- uCGUCcuuCUcGGGGCCGCGGGcGAcg-GUCu -3'
miRNA:   3'- -GCGGu--GA-CCCCGGCGCCC-CUcuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 8486 0.68 0.452586
Target:  5'- gGUCGgacGGGGCgGgCGGGGAgGGUGUCg -3'
miRNA:   3'- gCGGUga-CCCCGgC-GCCCCU-CUACAG- -5'
29548 3' -62.9 NC_006151.1 + 10422 0.7 0.376548
Target:  5'- aCGCCGCggGuGGGCCgaggccgGCGGGGAGGg--- -3'
miRNA:   3'- -GCGGUGa-C-CCCGG-------CGCCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 18042 0.67 0.497763
Target:  5'- uCGUC-CUGGGGgCgcaGCGGGGAGcgggGUCc -3'
miRNA:   3'- -GCGGuGACCCCgG---CGCCCCUCua--CAG- -5'
29548 3' -62.9 NC_006151.1 + 18151 0.66 0.554449
Target:  5'- uGUCgGCgGGGGCgGCGGcGGGcAUGUCg -3'
miRNA:   3'- gCGG-UGaCCCCGgCGCC-CCUcUACAG- -5'
29548 3' -62.9 NC_006151.1 + 21429 0.68 0.470398
Target:  5'- gGCCucgGGGGUCGCGGcGuGGGGUGg- -3'
miRNA:   3'- gCGGugaCCCCGGCGCC-C-CUCUACag -5'
29548 3' -62.9 NC_006151.1 + 21574 0.67 0.507043
Target:  5'- cCGCCGa--GGGCCGCGcGGGGucGAUGg- -3'
miRNA:   3'- -GCGGUgacCCCGGCGC-CCCU--CUACag -5'
29548 3' -62.9 NC_006151.1 + 22199 0.66 0.573791
Target:  5'- aCGuCCGC-GGGGCCGacgaaGGGcGAGGggaccGUCg -3'
miRNA:   3'- -GC-GGUGaCCCCGGCg----CCC-CUCUa----CAG- -5'
29548 3' -62.9 NC_006151.1 + 23002 0.74 0.210607
Target:  5'- gGCCGCgcgggUGGGGgCGCGGGGGuGGUGg- -3'
miRNA:   3'- gCGGUG-----ACCCCgGCGCCCCU-CUACag -5'
29548 3' -62.9 NC_006151.1 + 23405 0.71 0.324922
Target:  5'- gCGCCagcGCUGGuggucgccGGCCGUGGGGGcGAUGg- -3'
miRNA:   3'- -GCGG---UGACC--------CCGGCGCCCCU-CUACag -5'
29548 3' -62.9 NC_006151.1 + 28372 0.67 0.544849
Target:  5'- uCGCCAaugGGGGCaCGUGGGGcccGUGg- -3'
miRNA:   3'- -GCGGUga-CCCCG-GCGCCCCuc-UACag -5'
29548 3' -62.9 NC_006151.1 + 29433 0.8 0.080026
Target:  5'- gGCCGCggGGGGCgGCGGGGAGAg--- -3'
miRNA:   3'- gCGGUGa-CCCCGgCGCCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 29602 0.66 0.603075
Target:  5'- gGCCGCggcggcgGGGGCUGgUGuGGGAGGaGUg -3'
miRNA:   3'- gCGGUGa------CCCCGGC-GC-CCCUCUaCAg -5'
29548 3' -62.9 NC_006151.1 + 30663 0.7 0.339328
Target:  5'- gGCCGCgcugguuccGGGaaGCCucccccggcggGCGGGGGGGUGUCg -3'
miRNA:   3'- gCGGUGa--------CCC--CGG-----------CGCCCCUCUACAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.