miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 5' -56.5 NC_006151.1 + 134782 0.67 0.84724
Target:  5'- cGG-CUCCACgGGCcUGUgaggCCGCGGCg -3'
miRNA:   3'- aCUaGAGGUG-CCGaGCGua--GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 71074 0.67 0.846439
Target:  5'- gUGGUCUucuaccaCCACGGCgcCGCGggCGCGGg -3'
miRNA:   3'- -ACUAGA-------GGUGCCGa-GCGUagGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 132595 0.67 0.842404
Target:  5'- aUGggCUCCGCcccggGcacccccaggucgacGCUCGCGUCCGCcgucGGCg -3'
miRNA:   3'- -ACuaGAGGUG-----C---------------CGAGCGUAGGCG----UCG- -5'
29548 5' -56.5 NC_006151.1 + 116318 0.67 0.839142
Target:  5'- cGAUgacgCCGC-GCUCGCGcgggcCCGCGGCg -3'
miRNA:   3'- aCUAga--GGUGcCGAGCGUa----GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 118148 0.67 0.839142
Target:  5'- cGAcg-CCGCGGCgguggCGCcgCUGguGCg -3'
miRNA:   3'- aCUagaGGUGCCGa----GCGuaGGCguCG- -5'
29548 5' -56.5 NC_006151.1 + 40127 0.67 0.838322
Target:  5'- aGAUCgucggcgUCCGCGGCggCGaCGgccggccCCGCGGCc -3'
miRNA:   3'- aCUAG-------AGGUGCCGa-GC-GUa------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 79765 0.67 0.838322
Target:  5'- gGGUCcccggUCCACGGCggccggaUCGCGgccucggCGCGGCa -3'
miRNA:   3'- aCUAG-----AGGUGCCG-------AGCGUag-----GCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 88957 0.67 0.834193
Target:  5'- aGGUCUCCcCGGCgcgcgggaagacggCGCAcCCGaAGCu -3'
miRNA:   3'- aCUAGAGGuGCCGa-------------GCGUaGGCgUCG- -5'
29548 5' -56.5 NC_006151.1 + 130360 0.67 0.830856
Target:  5'- gUGGUUg--ACGGCcgCGCGcgCCGCGGCg -3'
miRNA:   3'- -ACUAGaggUGCCGa-GCGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 89268 0.67 0.830856
Target:  5'- gUGGUCgacggcgCCGCGGCgaugGCcgCCGCguagAGCg -3'
miRNA:   3'- -ACUAGa------GGUGCCGag--CGuaGGCG----UCG- -5'
29548 5' -56.5 NC_006151.1 + 68774 0.67 0.830856
Target:  5'- gGcgCg-CGCGGCgaggugCGCcgCCGCGGCc -3'
miRNA:   3'- aCuaGagGUGCCGa-----GCGuaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 70626 0.67 0.822388
Target:  5'- aGAUcCUCgGCGGCgcCGUggCCGCGcGCg -3'
miRNA:   3'- aCUA-GAGgUGCCGa-GCGuaGGCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 134578 0.67 0.822388
Target:  5'- gGAUCcagaaCCGCGGCgCGCAcCCGguGa -3'
miRNA:   3'- aCUAGa----GGUGCCGaGCGUaGGCguCg -5'
29548 5' -56.5 NC_006151.1 + 75263 0.67 0.822388
Target:  5'- ---cCUCCGCgGGCUccuggCGCAgcgCCGcCAGCg -3'
miRNA:   3'- acuaGAGGUG-CCGA-----GCGUa--GGC-GUCG- -5'
29548 5' -56.5 NC_006151.1 + 72405 0.67 0.813746
Target:  5'- -cGUCUCCagaaacaccacGCGGCccUCGCAccUCUGCAGg -3'
miRNA:   3'- acUAGAGG-----------UGCCG--AGCGU--AGGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 132572 0.67 0.813746
Target:  5'- ---cCUCCACGGC-CGgGaCuCGCGGCa -3'
miRNA:   3'- acuaGAGGUGCCGaGCgUaG-GCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 51383 0.67 0.813746
Target:  5'- gGAUCgugaCGCGGCccggggcgagCGCGUC-GCAGCg -3'
miRNA:   3'- aCUAGag--GUGCCGa---------GCGUAGgCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 109253 0.67 0.811121
Target:  5'- cGGUCUCCGCuGGCggccccgacgUCGCuggCCGCccccuccgagaucgAGCg -3'
miRNA:   3'- aCUAGAGGUG-CCG----------AGCGua-GGCG--------------UCG- -5'
29548 5' -56.5 NC_006151.1 + 59853 0.67 0.804939
Target:  5'- ----gUCCGgGGggCGCAgcugCCGCAGCa -3'
miRNA:   3'- acuagAGGUgCCgaGCGUa---GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 82864 0.67 0.804939
Target:  5'- cGGUCUCCAucUGGC-CGCGg-CGCGGg -3'
miRNA:   3'- aCUAGAGGU--GCCGaGCGUagGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.