miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 5' -56.5 NC_006151.1 + 19571 0.78 0.277111
Target:  5'- aUGGUCaccgCCACGGCgUCGCAgCCGCGGa -3'
miRNA:   3'- -ACUAGa---GGUGCCG-AGCGUaGGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 119067 0.75 0.380847
Target:  5'- ---cCUCCGCGGgcgcgcccguCUCGCAggCCGCGGCg -3'
miRNA:   3'- acuaGAGGUGCC----------GAGCGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 672 0.75 0.38918
Target:  5'- cGggCUCCGCGGaUCGCAUCgGCGcGCc -3'
miRNA:   3'- aCuaGAGGUGCCgAGCGUAGgCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 63686 0.75 0.406202
Target:  5'- aGAcCUCCGacugGGCgugCGCGUUCGCGGCg -3'
miRNA:   3'- aCUaGAGGUg---CCGa--GCGUAGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 121065 0.74 0.423685
Target:  5'- gUGggCUUCACGuGCUCGCAgacgggCgGCGGCg -3'
miRNA:   3'- -ACuaGAGGUGC-CGAGCGUa-----GgCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 81525 0.74 0.432593
Target:  5'- gUGAgcUCggcggCCGCGGCggCGCGcUCCGCGGUg -3'
miRNA:   3'- -ACU--AGa----GGUGCCGa-GCGU-AGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 66512 0.74 0.450732
Target:  5'- gGAUCUUCGCcgGGCUCGCGcgcgCCGC-GCu -3'
miRNA:   3'- aCUAGAGGUG--CCGAGCGUa---GGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 29586 0.74 0.459956
Target:  5'- gGAUCgCgGCGGCU-GCggCCGCGGCg -3'
miRNA:   3'- aCUAGaGgUGCCGAgCGuaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 17043 0.73 0.46928
Target:  5'- cGAUCacgUCCAgGGCgUCgGCGUCCGuCAGCc -3'
miRNA:   3'- aCUAG---AGGUgCCG-AG-CGUAGGC-GUCG- -5'
29548 5' -56.5 NC_006151.1 + 19428 0.73 0.487256
Target:  5'- ---gCUCCggggugacgauggGCGGCUCGCGcuggagCCGCGGCa -3'
miRNA:   3'- acuaGAGG-------------UGCCGAGCGUa-----GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 128592 0.73 0.497811
Target:  5'- -cGUCUCgCGCGGCccgCGCGccacCCGCGGCg -3'
miRNA:   3'- acUAGAG-GUGCCGa--GCGUa---GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 35965 0.73 0.497811
Target:  5'- ---gCUCCugGCGGC-CGCcgCCGCGGCc -3'
miRNA:   3'- acuaGAGG--UGCCGaGCGuaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 2214 0.73 0.497811
Target:  5'- gGGUCUCCACGGC--GCccCCgGCGGCg -3'
miRNA:   3'- aCUAGAGGUGCCGagCGuaGG-CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 100211 0.72 0.527092
Target:  5'- cGAUggCCACGGC-CGCGggcgCCGUGGCc -3'
miRNA:   3'- aCUAgaGGUGCCGaGCGUa---GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 74058 0.72 0.527092
Target:  5'- gGAUCagCAUGGCgucCGCGUCCaCGGCg -3'
miRNA:   3'- aCUAGagGUGCCGa--GCGUAGGcGUCG- -5'
29548 5' -56.5 NC_006151.1 + 58713 0.72 0.527092
Target:  5'- gGGUCcgCCAgCGcccccgugccGCUCGCGUCgCGCAGCg -3'
miRNA:   3'- aCUAGa-GGU-GC----------CGAGCGUAG-GCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 70047 0.72 0.546967
Target:  5'- gGAgacCCACGGCUCGCAgacgcccgagCCGUGGUa -3'
miRNA:   3'- aCUagaGGUGCCGAGCGUa---------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 130329 0.72 0.546967
Target:  5'- cGcgCUCgGgGaGCUCGCGcgCCGCGGCg -3'
miRNA:   3'- aCuaGAGgUgC-CGAGCGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 58377 0.72 0.546967
Target:  5'- gUGAUCUCgACGGagagCGCGg-CGCAGCc -3'
miRNA:   3'- -ACUAGAGgUGCCga--GCGUagGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 139271 0.72 0.555989
Target:  5'- cGcgCUCCgACGGCggacgcgccgcccUCgGCGUCUGCGGCg -3'
miRNA:   3'- aCuaGAGG-UGCCG-------------AG-CGUAGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.