miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 5' -56.5 NC_006151.1 + 672 0.75 0.38918
Target:  5'- cGggCUCCGCGGaUCGCAUCgGCGcGCc -3'
miRNA:   3'- aCuaGAGGUGCCgAGCGUAGgCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 723 0.66 0.877606
Target:  5'- gGGggUCCGCgGGCgggggcuucCGC-UCCGCGGCg -3'
miRNA:   3'- aCUagAGGUG-CCGa--------GCGuAGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 1686 0.68 0.758721
Target:  5'- cGAgcccUCcgCCGCGGC-CGCcgCCGCcGCu -3'
miRNA:   3'- aCU----AGa-GGUGCCGaGCGuaGGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 2214 0.73 0.497811
Target:  5'- gGGUCUCCACGGC--GCccCCgGCGGCg -3'
miRNA:   3'- aCUAGAGGUGCCGagCGuaGG-CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 2334 0.66 0.87033
Target:  5'- cGGcCUCgGCgucgGGCUCcaGCAgcgCCGCGGCg -3'
miRNA:   3'- aCUaGAGgUG----CCGAG--CGUa--GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 4115 0.68 0.795974
Target:  5'- aGAg-UCCGCGGCcUGCcgCCGCucGGCc -3'
miRNA:   3'- aCUagAGGUGCCGaGCGuaGGCG--UCG- -5'
29548 5' -56.5 NC_006151.1 + 4381 0.69 0.699655
Target:  5'- cGGUCgccUCCcCGGCgcggGgGUCCGCGGCg -3'
miRNA:   3'- aCUAG---AGGuGCCGag--CgUAGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 4465 0.69 0.739383
Target:  5'- aGGUCUUCugGGUgcgaUCGUAgCgGCGGCu -3'
miRNA:   3'- aCUAGAGGugCCG----AGCGUaGgCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 4786 0.66 0.884662
Target:  5'- cGggCccggCCGCGGCgcgguaGCGggCCGCGGCc -3'
miRNA:   3'- aCuaGa---GGUGCCGag----CGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 5022 0.66 0.891493
Target:  5'- cGggCUCCGgGGC-CGgGgccggggaggCCGCGGCg -3'
miRNA:   3'- aCuaGAGGUgCCGaGCgUa---------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 7968 0.71 0.587363
Target:  5'- -cGUCUUC-CGGCUCGUGuguccuUCCGCGGUa -3'
miRNA:   3'- acUAGAGGuGCCGAGCGU------AGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 11229 0.67 0.84724
Target:  5'- --uUCUCC-CgGGC-CGCGagggCCGCGGCg -3'
miRNA:   3'- acuAGAGGuG-CCGaGCGUa---GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 12671 0.66 0.87033
Target:  5'- -----gCCGCGGC-CGCAgCCGCcGCg -3'
miRNA:   3'- acuagaGGUGCCGaGCGUaGGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 13177 0.72 0.577198
Target:  5'- cGGUCgCCGCGGCcgucUCGgGgcCCGCGGCg -3'
miRNA:   3'- aCUAGaGGUGCCG----AGCgUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 15038 0.68 0.768226
Target:  5'- gUGcgCgUCCACGGCgCGCGgggCCcCGGCg -3'
miRNA:   3'- -ACuaG-AGGUGCCGaGCGUa--GGcGUCG- -5'
29548 5' -56.5 NC_006151.1 + 17043 0.73 0.46928
Target:  5'- cGAUCacgUCCAgGGCgUCgGCGUCCGuCAGCc -3'
miRNA:   3'- aCUAG---AGGUgCCG-AG-CGUAGGC-GUCG- -5'
29548 5' -56.5 NC_006151.1 + 17442 0.69 0.705687
Target:  5'- cGAUCUCCGaGGagCGCAgcaccacguguugCCGCGGCg -3'
miRNA:   3'- aCUAGAGGUgCCgaGCGUa------------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 19428 0.73 0.487256
Target:  5'- ---gCUCCggggugacgauggGCGGCUCGCGcuggagCCGCGGCa -3'
miRNA:   3'- acuaGAGG-------------UGCCGAGCGUa-----GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 19571 0.78 0.277111
Target:  5'- aUGGUCaccgCCACGGCgUCGCAgCCGCGGa -3'
miRNA:   3'- -ACUAGa---GGUGCCG-AGCGUaGGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 19617 0.68 0.777609
Target:  5'- aGAUCccggccaCCACGGCgcCGUcgCCGCGcGCg -3'
miRNA:   3'- aCUAGa------GGUGCCGa-GCGuaGGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.