miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 3' -58 NC_006151.1 + 101571 0.66 0.818269
Target:  5'- cGCGCacgucGCGGGCUacgccgccaGCGAGCUCCGg -3'
miRNA:   3'- -UGCGac---CGCCUGAaaa------CGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 20102 0.66 0.818269
Target:  5'- -gGCUGGgGGACgg--GC--GCCCCGg -3'
miRNA:   3'- ugCGACCgCCUGaaaaCGcuCGGGGU- -5'
29551 3' -58 NC_006151.1 + 92868 0.66 0.817406
Target:  5'- -aGCUGGCGGGCcugUUUUG-GAaacacauacccccGCCCCc -3'
miRNA:   3'- ugCGACCGCCUG---AAAACgCU-------------CGGGGu -5'
29551 3' -58 NC_006151.1 + 112954 0.66 0.815675
Target:  5'- cGCGCgauguuuuucaccgUGGCGGACgcgcGCGcGCCgCCGa -3'
miRNA:   3'- -UGCG--------------ACCGCCUGaaaaCGCuCGG-GGU- -5'
29551 3' -58 NC_006151.1 + 77102 0.66 0.809565
Target:  5'- aGCGCgGGCGcGGCgg--GCGcGCgCCCAc -3'
miRNA:   3'- -UGCGaCCGC-CUGaaaaCGCuCG-GGGU- -5'
29551 3' -58 NC_006151.1 + 23410 0.66 0.804265
Target:  5'- aGCGCUGGUGGuCgccggccguggggGCGAugggugggagggugGCCCCGg -3'
miRNA:   3'- -UGCGACCGCCuGaaaa---------CGCU--------------CGGGGU- -5'
29551 3' -58 NC_006151.1 + 50121 0.66 0.800701
Target:  5'- cGCGgUGcGCGcccGACgcccacGCGAGCCCCGc -3'
miRNA:   3'- -UGCgAC-CGC---CUGaaaa--CGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 50650 0.66 0.800701
Target:  5'- cCGCgGGCGGACccgagucgUGCGcGGCCgCAc -3'
miRNA:   3'- uGCGaCCGCCUGaaa-----ACGC-UCGGgGU- -5'
29551 3' -58 NC_006151.1 + 5671 0.66 0.800701
Target:  5'- -gGCUGG-GGAa----GCGGGCCCCc -3'
miRNA:   3'- ugCGACCgCCUgaaaaCGCUCGGGGu -5'
29551 3' -58 NC_006151.1 + 46637 0.66 0.79891
Target:  5'- gACGCggccggacgGGCGGACaggcccaggGCGAGaCUCCGg -3'
miRNA:   3'- -UGCGa--------CCGCCUGaaaa-----CGCUC-GGGGU- -5'
29551 3' -58 NC_006151.1 + 100346 0.66 0.792593
Target:  5'- gGCGuCUGGCGGACgucguggacgccGUGGGCgCCu -3'
miRNA:   3'- -UGC-GACCGCCUGaaaa--------CGCUCGgGGu -5'
29551 3' -58 NC_006151.1 + 130548 0.66 0.791684
Target:  5'- cGCGCgagGGCGGcGCgc-UGCc-GCCCCAc -3'
miRNA:   3'- -UGCGa--CCGCC-UGaaaACGcuCGGGGU- -5'
29551 3' -58 NC_006151.1 + 117245 0.66 0.791684
Target:  5'- cACGUcGGCGGGCccgaggcGCGGGCCgCGc -3'
miRNA:   3'- -UGCGaCCGCCUGaaaa---CGCUCGGgGU- -5'
29551 3' -58 NC_006151.1 + 31253 0.66 0.791684
Target:  5'- -aGCgGGCGGGCga--GCcgGGGCCCCc -3'
miRNA:   3'- ugCGaCCGCCUGaaaaCG--CUCGGGGu -5'
29551 3' -58 NC_006151.1 + 51230 0.66 0.790775
Target:  5'- cGCGCaGGCGGcgcgagcGCUcg-GCGcAGCUCCAg -3'
miRNA:   3'- -UGCGaCCGCC-------UGAaaaCGC-UCGGGGU- -5'
29551 3' -58 NC_006151.1 + 28804 0.66 0.788951
Target:  5'- cCGCgGGaCGGGCg-UccgggaccggccaaUGCGGGCCCCGg -3'
miRNA:   3'- uGCGaCC-GCCUGaaA--------------ACGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 3829 0.66 0.782524
Target:  5'- gUGCUGGCgGGGCUg--GaGGGCCCgGa -3'
miRNA:   3'- uGCGACCG-CCUGAaaaCgCUCGGGgU- -5'
29551 3' -58 NC_006151.1 + 4814 0.66 0.773229
Target:  5'- cGCGgcCUGGCGGACguc-GUccucgucccaGAGCCCCu -3'
miRNA:   3'- -UGC--GACCGCCUGaaaaCG----------CUCGGGGu -5'
29551 3' -58 NC_006151.1 + 120780 0.66 0.771354
Target:  5'- cCGCUGGCGGACgcggccgacGCGgAGCgCgCCGc -3'
miRNA:   3'- uGCGACCGCCUGaaaa-----CGC-UCG-G-GGU- -5'
29551 3' -58 NC_006151.1 + 39739 0.67 0.754269
Target:  5'- cGCGCUcGGgcucggggaccCGGACUUUgacGCGGGCgCCGc -3'
miRNA:   3'- -UGCGA-CC-----------GCCUGAAAa--CGCUCGgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.