miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 133638 0.77 0.134058
Target:  5'- gCCGGGGCggUGGUccgGGUGCgagagGCGCUGCc -3'
miRNA:   3'- gGGCCCCG--ACCA---CCACGag---CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 19429 0.75 0.193102
Target:  5'- cUCCGGGGUgacGaUGGgcgGCUCGCGCUGg -3'
miRNA:   3'- -GGGCCCCGa--CcACCa--CGAGCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 98354 0.73 0.25568
Target:  5'- gCCCGcGGGCgugcgcgGGcucUGG-GCgcgCGCGCUGCg -3'
miRNA:   3'- -GGGC-CCCGa------CC---ACCaCGa--GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 20126 0.71 0.319767
Target:  5'- -aCGGGGCUGGgGG-GCggGCGCcGCg -3'
miRNA:   3'- ggGCCCCGACCaCCaCGagCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 103534 0.71 0.323973
Target:  5'- cCCCGGcGcGCUGGUGGgcgccgggcagccGCUCgggGCGCUGg -3'
miRNA:   3'- -GGGCC-C-CGACCACCa------------CGAG---CGCGACg -5'
29551 5' -62.6 NC_006151.1 + 39058 0.71 0.341206
Target:  5'- cCCCGaGGacgugcGCgUGGUGGUGCUCuacgaccCGCUGCc -3'
miRNA:   3'- -GGGC-CC------CG-ACCACCACGAGc------GCGACG- -5'
29551 5' -62.6 NC_006151.1 + 101096 0.71 0.341206
Target:  5'- aCCUGGGGCccgGGUcGGgcguCUCGUGcCUGCg -3'
miRNA:   3'- -GGGCCCCGa--CCA-CCac--GAGCGC-GACG- -5'
29551 5' -62.6 NC_006151.1 + 69130 0.71 0.34858
Target:  5'- cUCCGcGGGCaGGgcgcgcgGGUGCUCGaCGCcgUGCc -3'
miRNA:   3'- -GGGC-CCCGaCCa------CCACGAGC-GCG--ACG- -5'
29551 5' -62.6 NC_006151.1 + 102297 0.71 0.34858
Target:  5'- gCCGGGGacuuugUGGccgccacgcacaUGGUGCUgacggaggcgcgCGCGCUGCu -3'
miRNA:   3'- gGGCCCCg-----ACC------------ACCACGA------------GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 102036 0.71 0.356067
Target:  5'- gUCCGGGaGCUGGagcUGGccccGCUCGaccugggccCGCUGCa -3'
miRNA:   3'- -GGGCCC-CGACC---ACCa---CGAGC---------GCGACG- -5'
29551 5' -62.6 NC_006151.1 + 3677 0.71 0.356067
Target:  5'- cCCCGGGGC-GGcGG-GCcccgggCGCGCgGCg -3'
miRNA:   3'- -GGGCCCCGaCCaCCaCGa-----GCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 103033 0.7 0.371377
Target:  5'- cCUCGGGGcCUGGU-----UCGCGCUGCu -3'
miRNA:   3'- -GGGCCCC-GACCAccacgAGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 100616 0.7 0.371377
Target:  5'- uCCUGGcGcGCUGGgaccUGGUcagcGC-CGCGCUGCg -3'
miRNA:   3'- -GGGCC-C-CGACC----ACCA----CGaGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 112073 0.7 0.379198
Target:  5'- -gUGGGGCUGGUGGaGCuccccgggUCGgGCgGCg -3'
miRNA:   3'- ggGCCCCGACCACCaCG--------AGCgCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 102521 0.7 0.390333
Target:  5'- cCCCGGcGGCgucuacgaccagacGGUGGUgGCgcgCGCGCggGCc -3'
miRNA:   3'- -GGGCC-CCGa-------------CCACCA-CGa--GCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 85757 0.69 0.411569
Target:  5'- uCCCcGGGCUGGccGcGCUgGCGCUGg -3'
miRNA:   3'- -GGGcCCCGACCacCaCGAgCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 55964 0.69 0.414899
Target:  5'- uCCCGcGGCUGGUgugcgaggugcgcgaGGUGCcCGgGCUGa -3'
miRNA:   3'- -GGGCcCCGACCA---------------CCACGaGCgCGACg -5'
29551 5' -62.6 NC_006151.1 + 54374 0.69 0.419925
Target:  5'- gCCCGGGaCUGGaUGGcgcaccUGCgcgCGCGCgGCc -3'
miRNA:   3'- -GGGCCCcGACC-ACC------ACGa--GCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 59145 0.69 0.428383
Target:  5'- gCCCGcGGGCgGGUccaGGccgGCgUCGCGCaGCa -3'
miRNA:   3'- -GGGC-CCCGaCCA---CCa--CG-AGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 2627 0.69 0.445596
Target:  5'- gUCCGGGGCccGGcgcgGGUGCUcacCGUGUaGCg -3'
miRNA:   3'- -GGGCCCCGa-CCa---CCACGA---GCGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.