miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 2200 0.66 0.614165
Target:  5'- cCCCGcGGGCcGGUGG-GuCUCcacgGCGCccccgGCg -3'
miRNA:   3'- -GGGC-CCCGaCCACCaC-GAG----CGCGa----CG- -5'
29551 5' -62.6 NC_006151.1 + 2627 0.69 0.445596
Target:  5'- gUCCGGGGCccGGcgcgGGUGCUcacCGUGUaGCg -3'
miRNA:   3'- -GGGCCCCGa-CCa---CCACGA---GCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 3453 0.66 0.59464
Target:  5'- gUCGGGcGC-GG-GGUGCUCGgGCauggGCc -3'
miRNA:   3'- gGGCCC-CGaCCaCCACGAGCgCGa---CG- -5'
29551 5' -62.6 NC_006151.1 + 3677 0.71 0.356067
Target:  5'- cCCCGGGGC-GGcGG-GCcccgggCGCGCgGCg -3'
miRNA:   3'- -GGGCCCCGaCCaCCaCGa-----GCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 3813 0.68 0.47212
Target:  5'- gCUGGaGCUGGacuUGGUGCUgGCGggGCu -3'
miRNA:   3'- gGGCCcCGACC---ACCACGAgCGCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 5871 0.66 0.59464
Target:  5'- gCCCGGGGCcgccgGG-GGccccgGcCUCuGCcGCUGCg -3'
miRNA:   3'- -GGGCCCCGa----CCaCCa----C-GAG-CG-CGACG- -5'
29551 5' -62.6 NC_006151.1 + 10916 0.66 0.634718
Target:  5'- aCCGGGGUcGGgcccacggcgccgagGGUGggCGCGCgUGUc -3'
miRNA:   3'- gGGCCCCGaCCa--------------CCACgaGCGCG-ACG- -5'
29551 5' -62.6 NC_006151.1 + 17105 0.67 0.536855
Target:  5'- gUCGGGGCgccGG-GG-GCUCcggcggcgGUGCUGCg -3'
miRNA:   3'- gGGCCCCGa--CCaCCaCGAG--------CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 19429 0.75 0.193102
Target:  5'- cUCCGGGGUgacGaUGGgcgGCUCGCGCUGg -3'
miRNA:   3'- -GGGCCCCGa--CcACCa--CGAGCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 20126 0.71 0.319767
Target:  5'- -aCGGGGCUGGgGG-GCggGCGCcGCg -3'
miRNA:   3'- ggGCCCCGACCaCCaCGagCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 23455 0.67 0.546371
Target:  5'- cCCCGGGGCgGGUGaucGUGagccCGUGCuucaUGCc -3'
miRNA:   3'- -GGGCCCCGaCCAC---CACga--GCGCG----ACG- -5'
29551 5' -62.6 NC_006151.1 + 31406 0.68 0.473018
Target:  5'- gCCGGGGCgaggggaaggggaagGGgggggacggGGUGCgCGCGCgUGUg -3'
miRNA:   3'- gGGCCCCGa--------------CCa--------CCACGaGCGCG-ACG- -5'
29551 5' -62.6 NC_006151.1 + 39058 0.71 0.341206
Target:  5'- cCCCGaGGacgugcGCgUGGUGGUGCUCuacgaccCGCUGCc -3'
miRNA:   3'- -GGGC-CC------CG-ACCACCACGAGc------GCGACG- -5'
29551 5' -62.6 NC_006151.1 + 41317 0.66 0.633739
Target:  5'- --gGGGGggGGUGGUGgUgGUGUUGUu -3'
miRNA:   3'- gggCCCCgaCCACCACgAgCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 42259 0.66 0.614165
Target:  5'- cCCCGGGGagcggggGGUGGga-UCGCGa-GCc -3'
miRNA:   3'- -GGGCCCCga-----CCACCacgAGCGCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 43244 0.66 0.618078
Target:  5'- aCCGGGGagugcgugcgggugUGG-GGUGCUCuCGCUcuGCu -3'
miRNA:   3'- gGGCCCCg-------------ACCaCCACGAGcGCGA--CG- -5'
29551 5' -62.6 NC_006151.1 + 43379 0.67 0.564593
Target:  5'- gUCgGGGGC-GGUGGUggccgucGCUCGUgGCcgGCa -3'
miRNA:   3'- -GGgCCCCGaCCACCA-------CGAGCG-CGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 44887 0.68 0.518003
Target:  5'- cCUCGGcGGUgugcGGUGGUGUgugUGCGCgagagggGCg -3'
miRNA:   3'- -GGGCC-CCGa---CCACCACGa--GCGCGa------CG- -5'
29551 5' -62.6 NC_006151.1 + 47212 0.68 0.508676
Target:  5'- uCUCGGGGCUcucgggucGGcUGGgcgGCUCG-GCUGg -3'
miRNA:   3'- -GGGCCCCGA--------CC-ACCa--CGAGCgCGACg -5'
29551 5' -62.6 NC_006151.1 + 49241 0.67 0.575216
Target:  5'- cCCCGcucGGCUGGgcgcgGCUCGUGC-GCg -3'
miRNA:   3'- -GGGCc--CCGACCacca-CGAGCGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.