miRNA display CGI


Results 41 - 60 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 103459 0.66 0.591812
Target:  5'- cACgcCCGUG-CCGG-GCACGGUgcuCGCGg -3'
miRNA:   3'- -UGauGGCGCuGGCCgCGUGCCG---GCGC- -5'
29553 3' -63.2 NC_006151.1 + 109414 0.66 0.591812
Target:  5'- ---uUCGCGGCCGGcCGCACcaCCGCc -3'
miRNA:   3'- ugauGGCGCUGGCC-GCGUGccGGCGc -5'
29553 3' -63.2 NC_006151.1 + 28580 0.66 0.591812
Target:  5'- ---cCCGCauuGGCCGGCGCguccccggagGCGgguGCCGCGg -3'
miRNA:   3'- ugauGGCG---CUGGCCGCG----------UGC---CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 58148 0.66 0.591812
Target:  5'- cGCgGCCGCGugccACCGGCGguagaGCGccaccagcGCCGCGu -3'
miRNA:   3'- -UGaUGGCGC----UGGCCGCg----UGC--------CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 58339 0.66 0.591812
Target:  5'- cCU-CCGCGua-GGCGCGCGcgaagcugguccGCCGCGu -3'
miRNA:   3'- uGAuGGCGCuggCCGCGUGC------------CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 59289 0.66 0.591812
Target:  5'- cACgAgCGCGGCgUGGCGCccGCGGCUcaGCGg -3'
miRNA:   3'- -UGaUgGCGCUG-GCCGCG--UGCCGG--CGC- -5'
29553 3' -63.2 NC_006151.1 + 105128 0.66 0.591812
Target:  5'- cACgcacCCGCuGACgaCGcGCGUcgACGGCCGCGg -3'
miRNA:   3'- -UGau--GGCG-CUG--GC-CGCG--UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 136273 0.66 0.591812
Target:  5'- ---cCCGCGGCCGGCcUACGaCCuGCGg -3'
miRNA:   3'- ugauGGCGCUGGCCGcGUGCcGG-CGC- -5'
29553 3' -63.2 NC_006151.1 + 89486 0.66 0.591812
Target:  5'- uGCgcgGCgGCGAgCCGGUacGCGCGGgUGUGg -3'
miRNA:   3'- -UGa--UGgCGCU-GGCCG--CGUGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 84367 0.66 0.591812
Target:  5'- gGCggugAUCGCGAUcgCGGCGCGCGGggaCGgGc -3'
miRNA:   3'- -UGa---UGGCGCUG--GCCGCGUGCCg--GCgC- -5'
29553 3' -63.2 NC_006151.1 + 83922 0.66 0.591812
Target:  5'- --cGCCGCGACCcguccGCGUACGGCg--- -3'
miRNA:   3'- ugaUGGCGCUGGc----CGCGUGCCGgcgc -5'
29553 3' -63.2 NC_006151.1 + 86795 0.66 0.590845
Target:  5'- uCUGCCuaaaaGCGGggccuccCCGGCGCcCGGCCcaguGCGg -3'
miRNA:   3'- uGAUGG-----CGCU-------GGCCGCGuGCCGG----CGC- -5'
29553 3' -63.2 NC_006151.1 + 99534 0.66 0.588911
Target:  5'- --cGCCGCGcCCGcccacggagcacguGgGCGCGGCgCGCGc -3'
miRNA:   3'- ugaUGGCGCuGGC--------------CgCGUGCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 18806 0.66 0.582152
Target:  5'- --gACCGUGACguacuCGGC-CGCGGUgGCGa -3'
miRNA:   3'- ugaUGGCGCUG-----GCCGcGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 38679 0.66 0.582152
Target:  5'- --gACCGgGGgccCCGGCGCAaGcGCCGCu -3'
miRNA:   3'- ugaUGGCgCU---GGCCGCGUgC-CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 39131 0.66 0.582152
Target:  5'- gGCgccCCGCGcCCGGC-CugGGacCCGCGc -3'
miRNA:   3'- -UGau-GGCGCuGGCCGcGugCC--GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 89591 0.66 0.582152
Target:  5'- gGCUcGCCgGCGGCCgugaGGaCG-AUGGCCGCGa -3'
miRNA:   3'- -UGA-UGG-CGCUGG----CC-GCgUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 103389 0.66 0.582152
Target:  5'- gGCUGCgCGCGcuGCUGGgcgacuuugccaCGCugGGCCcgGCGg -3'
miRNA:   3'- -UGAUG-GCGC--UGGCC------------GCGugCCGG--CGC- -5'
29553 3' -63.2 NC_006151.1 + 18690 0.66 0.582152
Target:  5'- cACggGCgCGCGGgCGGCGC-CGGCguCGUGa -3'
miRNA:   3'- -UGa-UG-GCGCUgGCCGCGuGCCG--GCGC- -5'
29553 3' -63.2 NC_006151.1 + 18538 0.66 0.582152
Target:  5'- ---cCCGCG-UCGGCacccggaACGGCCGCGa -3'
miRNA:   3'- ugauGGCGCuGGCCGcg-----UGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.