miRNA display CGI


Results 21 - 40 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 120509 0.66 0.601499
Target:  5'- uGCUGCaGCGcaaccagcuGCCGGCGC--GGCUGCu -3'
miRNA:   3'- -UGAUGgCGC---------UGGCCGCGugCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 100894 0.66 0.601499
Target:  5'- uGCUgcGCCGCGG-CGcGCGCGCGcCCGaCGa -3'
miRNA:   3'- -UGA--UGGCGCUgGC-CGCGUGCcGGC-GC- -5'
29553 3' -63.2 NC_006151.1 + 138137 0.66 0.601499
Target:  5'- --gGCCGUggacgcggagGACCGGCGCGCgcucgaGGCCuucgugGCGg -3'
miRNA:   3'- ugaUGGCG----------CUGGCCGCGUG------CCGG------CGC- -5'
29553 3' -63.2 NC_006151.1 + 13181 0.66 0.601499
Target:  5'- --cGCCGCGGCCGuCuCGgGGCcCGCGg -3'
miRNA:   3'- ugaUGGCGCUGGCcGcGUgCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 18981 0.66 0.601499
Target:  5'- gGCUGCacgagGCGuacGCgCGGCGCGCcaccaGCCGCGc -3'
miRNA:   3'- -UGAUGg----CGC---UG-GCCGCGUGc----CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 20764 0.66 0.601499
Target:  5'- --cACCGCGgcggacgcgcGCCgGGCGaGCGGCuCGCGc -3'
miRNA:   3'- ugaUGGCGC----------UGG-CCGCgUGCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 49945 0.66 0.601499
Target:  5'- --cGCCGgGACCuGGC-CGCGGCCcUGg -3'
miRNA:   3'- ugaUGGCgCUGG-CCGcGUGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 81496 0.66 0.601499
Target:  5'- ----aCGCGGCCgucGGCgagaGCGCGGcCCGCGu -3'
miRNA:   3'- ugaugGCGCUGG---CCG----CGUGCC-GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 86599 0.66 0.601499
Target:  5'- uGCUGgCGCGcgccGCCGaGuCGC-CGGaCCGCGa -3'
miRNA:   3'- -UGAUgGCGC----UGGC-C-GCGuGCC-GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 101284 0.66 0.601499
Target:  5'- uACgagGgCGCGGgCGGCGC-CGcGCUGCa -3'
miRNA:   3'- -UGa--UgGCGCUgGCCGCGuGC-CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 132302 0.66 0.601499
Target:  5'- cCUGguCCGCGugCaGGCGCcacgagagcucGCGcGCCGUGg -3'
miRNA:   3'- uGAU--GGCGCugG-CCGCG-----------UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 85625 0.66 0.601499
Target:  5'- cGCcGCCGCcGCgCGGCGCcaGCGGggaCGCGc -3'
miRNA:   3'- -UGaUGGCGcUG-GCCGCG--UGCCg--GCGC- -5'
29553 3' -63.2 NC_006151.1 + 29404 0.66 0.601499
Target:  5'- gGCgggACCGCGcggagaagGCuCGGUGU--GGCCGCGg -3'
miRNA:   3'- -UGa--UGGCGC--------UG-GCCGCGugCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 113803 0.66 0.601499
Target:  5'- cGCUGCUGCGGC--GC-CACGGCCucGCGc -3'
miRNA:   3'- -UGAUGGCGCUGgcCGcGUGCCGG--CGC- -5'
29553 3' -63.2 NC_006151.1 + 113523 0.66 0.601499
Target:  5'- gGCggACgCGCGcuucCUGGCGCugauGCGcGCCGCGg -3'
miRNA:   3'- -UGa-UG-GCGCu---GGCCGCG----UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 105550 0.66 0.601499
Target:  5'- --aGCUGCGGCaCGacgcccugcgcGCGCugGCGGCCGCc -3'
miRNA:   3'- ugaUGGCGCUG-GC-----------CGCG--UGCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 102277 0.66 0.601499
Target:  5'- cGCUGCCGgagcgcggccCGGCCGGgGacuuugUGGCCGCc -3'
miRNA:   3'- -UGAUGGC----------GCUGGCCgCgu----GCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 3266 0.66 0.59956
Target:  5'- --cGCCGCGGCgcgCGGCGaugugcgccaggGCGGCCGgGu -3'
miRNA:   3'- ugaUGGCGCUG---GCCGCg-----------UGCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 99912 0.66 0.595684
Target:  5'- gACguggGCgCGCGACuaCGGCGC-CGGCCucauccccaacgucaGCGg -3'
miRNA:   3'- -UGa---UG-GCGCUG--GCCGCGuGCCGG---------------CGC- -5'
29553 3' -63.2 NC_006151.1 + 136273 0.66 0.591812
Target:  5'- ---cCCGCGGCCGGCcUACGaCCuGCGg -3'
miRNA:   3'- ugauGGCGCUGGCCGcGUGCcGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.