Results 21 - 40 of 450 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29553 | 3' | -63.2 | NC_006151.1 | + | 120509 | 0.66 | 0.601499 |
Target: 5'- uGCUGCaGCGcaaccagcuGCCGGCGC--GGCUGCu -3' miRNA: 3'- -UGAUGgCGC---------UGGCCGCGugCCGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 100894 | 0.66 | 0.601499 |
Target: 5'- uGCUgcGCCGCGG-CGcGCGCGCGcCCGaCGa -3' miRNA: 3'- -UGA--UGGCGCUgGC-CGCGUGCcGGC-GC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 138137 | 0.66 | 0.601499 |
Target: 5'- --gGCCGUggacgcggagGACCGGCGCGCgcucgaGGCCuucgugGCGg -3' miRNA: 3'- ugaUGGCG----------CUGGCCGCGUG------CCGG------CGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 13181 | 0.66 | 0.601499 |
Target: 5'- --cGCCGCGGCCGuCuCGgGGCcCGCGg -3' miRNA: 3'- ugaUGGCGCUGGCcGcGUgCCG-GCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 18981 | 0.66 | 0.601499 |
Target: 5'- gGCUGCacgagGCGuacGCgCGGCGCGCcaccaGCCGCGc -3' miRNA: 3'- -UGAUGg----CGC---UG-GCCGCGUGc----CGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 20764 | 0.66 | 0.601499 |
Target: 5'- --cACCGCGgcggacgcgcGCCgGGCGaGCGGCuCGCGc -3' miRNA: 3'- ugaUGGCGC----------UGG-CCGCgUGCCG-GCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 49945 | 0.66 | 0.601499 |
Target: 5'- --cGCCGgGACCuGGC-CGCGGCCcUGg -3' miRNA: 3'- ugaUGGCgCUGG-CCGcGUGCCGGcGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 81496 | 0.66 | 0.601499 |
Target: 5'- ----aCGCGGCCgucGGCgagaGCGCGGcCCGCGu -3' miRNA: 3'- ugaugGCGCUGG---CCG----CGUGCC-GGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 86599 | 0.66 | 0.601499 |
Target: 5'- uGCUGgCGCGcgccGCCGaGuCGC-CGGaCCGCGa -3' miRNA: 3'- -UGAUgGCGC----UGGC-C-GCGuGCC-GGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 101284 | 0.66 | 0.601499 |
Target: 5'- uACgagGgCGCGGgCGGCGC-CGcGCUGCa -3' miRNA: 3'- -UGa--UgGCGCUgGCCGCGuGC-CGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 132302 | 0.66 | 0.601499 |
Target: 5'- cCUGguCCGCGugCaGGCGCcacgagagcucGCGcGCCGUGg -3' miRNA: 3'- uGAU--GGCGCugG-CCGCG-----------UGC-CGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 85625 | 0.66 | 0.601499 |
Target: 5'- cGCcGCCGCcGCgCGGCGCcaGCGGggaCGCGc -3' miRNA: 3'- -UGaUGGCGcUG-GCCGCG--UGCCg--GCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 29404 | 0.66 | 0.601499 |
Target: 5'- gGCgggACCGCGcggagaagGCuCGGUGU--GGCCGCGg -3' miRNA: 3'- -UGa--UGGCGC--------UG-GCCGCGugCCGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 113803 | 0.66 | 0.601499 |
Target: 5'- cGCUGCUGCGGC--GC-CACGGCCucGCGc -3' miRNA: 3'- -UGAUGGCGCUGgcCGcGUGCCGG--CGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 113523 | 0.66 | 0.601499 |
Target: 5'- gGCggACgCGCGcuucCUGGCGCugauGCGcGCCGCGg -3' miRNA: 3'- -UGa-UG-GCGCu---GGCCGCG----UGC-CGGCGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 105550 | 0.66 | 0.601499 |
Target: 5'- --aGCUGCGGCaCGacgcccugcgcGCGCugGCGGCCGCc -3' miRNA: 3'- ugaUGGCGCUG-GC-----------CGCG--UGCCGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 102277 | 0.66 | 0.601499 |
Target: 5'- cGCUGCCGgagcgcggccCGGCCGGgGacuuugUGGCCGCc -3' miRNA: 3'- -UGAUGGC----------GCUGGCCgCgu----GCCGGCGc -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 3266 | 0.66 | 0.59956 |
Target: 5'- --cGCCGCGGCgcgCGGCGaugugcgccaggGCGGCCGgGu -3' miRNA: 3'- ugaUGGCGCUG---GCCGCg-----------UGCCGGCgC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 99912 | 0.66 | 0.595684 |
Target: 5'- gACguggGCgCGCGACuaCGGCGC-CGGCCucauccccaacgucaGCGg -3' miRNA: 3'- -UGa---UG-GCGCUG--GCCGCGuGCCGG---------------CGC- -5' |
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29553 | 3' | -63.2 | NC_006151.1 | + | 136273 | 0.66 | 0.591812 |
Target: 5'- ---cCCGCGGCCGGCcUACGaCCuGCGg -3' miRNA: 3'- ugauGGCGCUGGCCGcGUGCcGG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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