miRNA display CGI


Results 21 - 40 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 5644 0.67 0.525061
Target:  5'- --cGCCGaGACCGGC-C-CGGCgGCGg -3'
miRNA:   3'- ugaUGGCgCUGGCCGcGuGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 5690 0.71 0.305471
Target:  5'- --cGCCGUG-CCGGCGCuGCGGCCa-- -3'
miRNA:   3'- ugaUGGCGCuGGCCGCG-UGCCGGcgc -5'
29553 3' -63.2 NC_006151.1 + 5897 0.68 0.461361
Target:  5'- uCUGCCGCugcgagugcuGCCGGgGUcgGCGGCCGgGg -3'
miRNA:   3'- uGAUGGCGc---------UGGCCgCG--UGCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 6124 0.71 0.312224
Target:  5'- gGCgGCCuCGuggcuCCGGC-CGCGGCCGCGa -3'
miRNA:   3'- -UGaUGGcGCu----GGCCGcGUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 6251 0.78 0.110031
Target:  5'- gGCUGCCGCcgucggGGCCGGaCGCGaugcccucuuccuCGGCCGCGg -3'
miRNA:   3'- -UGAUGGCG------CUGGCC-GCGU-------------GCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 8249 0.67 0.506484
Target:  5'- --gGCCG-GGCCGGCGCGcCGGgaCGCc -3'
miRNA:   3'- ugaUGGCgCUGGCCGCGU-GCCg-GCGc -5'
29553 3' -63.2 NC_006151.1 + 9465 0.69 0.41845
Target:  5'- uCUuCCGCGuccgcuUCGGCccccCGCGGCCGCGg -3'
miRNA:   3'- uGAuGGCGCu-----GGCCGc---GUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 10490 0.7 0.355108
Target:  5'- --aGCCGC--CCGGCGCGCGcccGCCGCc -3'
miRNA:   3'- ugaUGGCGcuGGCCGCGUGC---CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 10570 0.68 0.497301
Target:  5'- -aUGgCGCGGCCGGCucgGCGGCC-CGg -3'
miRNA:   3'- ugAUgGCGCUGGCCGcg-UGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 11237 0.66 0.562934
Target:  5'- --gGCCGCGAg-GGC-CGCGGCgGCGa -3'
miRNA:   3'- ugaUGGCGCUggCCGcGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 11326 0.67 0.54389
Target:  5'- -aUACCGCG-CgGGCgauaccGCGCGGgCCGCc -3'
miRNA:   3'- ugAUGGCGCuGgCCG------CGUGCC-GGCGc -5'
29553 3' -63.2 NC_006151.1 + 11691 0.71 0.326069
Target:  5'- gACgggGCCGCGGgaCGGCGCguGCGG-CGCGg -3'
miRNA:   3'- -UGa--UGGCGCUg-GCCGCG--UGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 13181 0.66 0.601499
Target:  5'- --cGCCGCGGCCGuCuCGgGGCcCGCGg -3'
miRNA:   3'- ugaUGGCGCUGGCcGcGUgCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 16901 0.72 0.267304
Target:  5'- gUUGCCGCGcccgccccggcGCCGGCGCACGucGCCcCGg -3'
miRNA:   3'- uGAUGGCGC-----------UGGCCGCGUGC--CGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 17469 0.71 0.311544
Target:  5'- gUUGCCGCGGCguguccucgucggCGGCGCGCcGCUGCu -3'
miRNA:   3'- uGAUGGCGCUG-------------GCCGCGUGcCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 18538 0.66 0.582152
Target:  5'- ---cCCGCG-UCGGCacccggaACGGCCGCGa -3'
miRNA:   3'- ugauGGCGCuGGCCGcg-----UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 18690 0.66 0.582152
Target:  5'- cACggGCgCGCGGgCGGCGC-CGGCguCGUGa -3'
miRNA:   3'- -UGa-UG-GCGCUgGCCGCGuGCCG--GCGC- -5'
29553 3' -63.2 NC_006151.1 + 18806 0.66 0.582152
Target:  5'- --gACCGUGACguacuCGGC-CGCGGUgGCGa -3'
miRNA:   3'- ugaUGGCGCUG-----GCCGcGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 18981 0.66 0.601499
Target:  5'- gGCUGCacgagGCGuacGCgCGGCGCGCcaccaGCCGCGc -3'
miRNA:   3'- -UGAUGg----CGC---UG-GCCGCGUGc----CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 19291 0.68 0.443911
Target:  5'- --cACCGgGGCCagcGGCGCggGCGGCCGg- -3'
miRNA:   3'- ugaUGGCgCUGG---CCGCG--UGCCGGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.