miRNA display CGI


Results 1 - 20 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 646 0.71 0.340365
Target:  5'- --cGCCgGCuuCCGGgGCGCGGCCGgGg -3'
miRNA:   3'- ugaUGG-CGcuGGCCgCGUGCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 1695 0.66 0.582152
Target:  5'- --cGCCGCGGCCGcCGC-CG-CCGCu -3'
miRNA:   3'- ugaUGGCGCUGGCcGCGuGCcGGCGc -5'
29553 3' -63.2 NC_006151.1 + 2108 0.71 0.29883
Target:  5'- aGCggGCCGCGggGCCGGcCGuCGCcGCCGCGg -3'
miRNA:   3'- -UGa-UGGCGC--UGGCC-GC-GUGcCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 2359 0.67 0.515739
Target:  5'- --cGCCGCGGCgcagaaGGCGCGCaacucGGCCgGCa -3'
miRNA:   3'- ugaUGGCGCUGg-----CCGCGUG-----CCGG-CGc -5'
29553 3' -63.2 NC_006151.1 + 2403 0.71 0.333161
Target:  5'- --gGCCGCGGagcUCGGCGaggccccgGCGGCCGCa -3'
miRNA:   3'- ugaUGGCGCU---GGCCGCg-------UGCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 2591 0.68 0.443911
Target:  5'- --cGCUgGCGGuaGGCGCGCGGCgGCa -3'
miRNA:   3'- ugaUGG-CGCUggCCGCGUGCCGgCGc -5'
29553 3' -63.2 NC_006151.1 + 2921 0.68 0.488194
Target:  5'- --cGCCGCG-CC-GCGC-CGaGCCGCGa -3'
miRNA:   3'- ugaUGGCGCuGGcCGCGuGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 3230 0.72 0.279581
Target:  5'- uCUGCCGCauCCaGGCgGCGCGGCgGCGg -3'
miRNA:   3'- uGAUGGCGcuGG-CCG-CGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 3266 0.66 0.59956
Target:  5'- --cGCCGCGGCgcgCGGCGaugugcgccaggGCGGCCGgGu -3'
miRNA:   3'- ugaUGGCGCUG---GCCGCg-----------UGCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 3614 0.72 0.279581
Target:  5'- cGCggugGCCGUGGCCGuccccGCGgAgGGCCGCGc -3'
miRNA:   3'- -UGa---UGGCGCUGGC-----CGCgUgCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 3879 0.7 0.385922
Target:  5'- --cGCCGCcGCCGGCGC-CGG-CGCu -3'
miRNA:   3'- ugaUGGCGcUGGCCGCGuGCCgGCGc -5'
29553 3' -63.2 NC_006151.1 + 3952 0.71 0.333161
Target:  5'- gGCU-CCGCGGgcCCGGgcCGCGCGGCgGCc -3'
miRNA:   3'- -UGAuGGCGCU--GGCC--GCGUGCCGgCGc -5'
29553 3' -63.2 NC_006151.1 + 3988 0.72 0.285885
Target:  5'- aGCcgGCCGCGgccacguugGCCGGgGCGaagagGGCCGCGg -3'
miRNA:   3'- -UGa-UGGCGC---------UGGCCgCGUg----CCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 4126 0.67 0.525061
Target:  5'- cCUGCCGCcgcucGGCCGG-GC-CGGCCcCGg -3'
miRNA:   3'- uGAUGGCG-----CUGGCCgCGuGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 4205 0.69 0.410162
Target:  5'- gGCggGCCcgaggGCGGCCGGgGCGCGGgCGgGc -3'
miRNA:   3'- -UGa-UGG-----CGCUGGCCgCGUGCCgGCgC- -5'
29553 3' -63.2 NC_006151.1 + 4315 0.77 0.137823
Target:  5'- cGCgggGCaCGCGGCCGGgcUGCGCGGCgGCGa -3'
miRNA:   3'- -UGa--UG-GCGCUGGCC--GCGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 4793 0.74 0.212375
Target:  5'- --gGCCGCGGCgCGGUaGCG-GGCCGCGg -3'
miRNA:   3'- ugaUGGCGCUG-GCCG-CGUgCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 5024 0.74 0.212375
Target:  5'- gGCU-CCGgGGCCGGgGCcggggaGGCCGCGg -3'
miRNA:   3'- -UGAuGGCgCUGGCCgCGug----CCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 5084 0.75 0.167435
Target:  5'- cGCgggGCCGCGGCgGGCGCcggcggagACGGUgGCGg -3'
miRNA:   3'- -UGa--UGGCGCUGgCCGCG--------UGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 5304 0.72 0.273387
Target:  5'- cGCUGCCGCugcuGCUGGaGCugcugaagccGCGGCCGCGg -3'
miRNA:   3'- -UGAUGGCGc---UGGCCgCG----------UGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.