miRNA display CGI


Results 1 - 20 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 124068 0.81 0.075588
Target:  5'- --cGCgGaCGGCCGuGCGCGCGGCCGCGa -3'
miRNA:   3'- ugaUGgC-GCUGGC-CGCGUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 123888 0.8 0.079527
Target:  5'- cGCUcGCCGCGGCCccgccgugcGGCGCgGCGGCCGUGa -3'
miRNA:   3'- -UGA-UGGCGCUGG---------CCGCG-UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 121298 0.8 0.085805
Target:  5'- gGCcgACCGCGACgGGCGCuggagcguggagGCGGCCGCc -3'
miRNA:   3'- -UGa-UGGCGCUGgCCGCG------------UGCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 57508 0.8 0.088001
Target:  5'- cGCUcgGCCGCGGCggCGGCggccgccuccgGCGCGGCCGCGg -3'
miRNA:   3'- -UGA--UGGCGCUG--GCCG-----------CGUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 58570 0.8 0.088001
Target:  5'- cGCcGCCGCccGCCGGCGuCGCGGCCGUGa -3'
miRNA:   3'- -UGaUGGCGc-UGGCCGC-GUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 141637 0.79 0.102337
Target:  5'- cGCUGCCGCGGC-GGCGCGgCGGggccCCGCGg -3'
miRNA:   3'- -UGAUGGCGCUGgCCGCGU-GCC----GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 92671 0.79 0.102337
Target:  5'- uGCUGCCgGCGGCCGGggaCGCGCGcucGCCGCGc -3'
miRNA:   3'- -UGAUGG-CGCUGGCC---GCGUGC---CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 6251 0.78 0.110031
Target:  5'- gGCUGCCGCcgucggGGCCGGaCGCGaugcccucuuccuCGGCCGCGg -3'
miRNA:   3'- -UGAUGGCG------CUGGCC-GCGU-------------GCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 92165 0.77 0.124889
Target:  5'- --gGCCGCGGCCGuGCGCGCcgacggcgacggGGCCGCc -3'
miRNA:   3'- ugaUGGCGCUGGC-CGCGUG------------CCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 97800 0.77 0.131209
Target:  5'- cGCUcagGCgCGCGGCCGuGCGC-CGGUCGCGg -3'
miRNA:   3'- -UGA---UG-GCGCUGGC-CGCGuGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 130245 0.77 0.135807
Target:  5'- --aGCCGCagaaggcgcggaagaGGCCGGCGCGCGGCCcCGa -3'
miRNA:   3'- ugaUGGCG---------------CUGGCCGCGUGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 75124 0.77 0.137823
Target:  5'- aGCUGguCgGCGGCCGGCgGCGCGGCCcagcGCGg -3'
miRNA:   3'- -UGAU--GgCGCUGGCCG-CGUGCCGG----CGC- -5'
29553 3' -63.2 NC_006151.1 + 4315 0.77 0.137823
Target:  5'- cGCgggGCaCGCGGCCGGgcUGCGCGGCgGCGa -3'
miRNA:   3'- -UGa--UG-GCGCUGGCC--GCGUGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 50616 0.77 0.140898
Target:  5'- cGCcGCCGCGGCagcgugcacgccuCGGCG-ACGGCCGCGg -3'
miRNA:   3'- -UGaUGGCGCUG-------------GCCGCgUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 96388 0.77 0.141243
Target:  5'- --cGCgCGCGguGCCGGCGCACGGCgGCc -3'
miRNA:   3'- ugaUG-GCGC--UGGCCGCGUGCCGgCGc -5'
29553 3' -63.2 NC_006151.1 + 104808 0.77 0.141243
Target:  5'- --cGCCGCGACCuGGCG-GCGGCgCGCGa -3'
miRNA:   3'- ugaUGGCGCUGG-CCGCgUGCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 119056 0.76 0.148318
Target:  5'- --cGCCGCGGCCgccuccgcgGGCGCGCccgucucgcaGGCCGCGg -3'
miRNA:   3'- ugaUGGCGCUGG---------CCGCGUG----------CCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 122495 0.76 0.148318
Target:  5'- gGCgagACgGCGcGCCGGCGCGCGGaCGCGc -3'
miRNA:   3'- -UGa--UGgCGC-UGGCCGCGUGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 137723 0.76 0.151606
Target:  5'- cCUGCCGUcgccguacgcgguGGCCGGCGCcgacACGGuCCGCGg -3'
miRNA:   3'- uGAUGGCG-------------CUGGCCGCG----UGCC-GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 89719 0.76 0.151975
Target:  5'- --gGCgGCG-CCGGC-CGCGGCCGCGg -3'
miRNA:   3'- ugaUGgCGCuGGCCGcGUGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.