miRNA display CGI


Results 1 - 20 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 132302 0.66 0.601499
Target:  5'- cCUGguCCGCGugCaGGCGCcacgagagcucGCGcGCCGUGg -3'
miRNA:   3'- uGAU--GGCGCugG-CCGCG-----------UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 61340 0.66 0.611207
Target:  5'- --gGCCaGCGGCUGcGCacCACGGCCGgGa -3'
miRNA:   3'- ugaUGG-CGCUGGC-CGc-GUGCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 57963 0.66 0.611207
Target:  5'- aGCccguCCGUGAgCCGGUGgGCGGCgaGCGn -3'
miRNA:   3'- -UGau--GGCGCU-GGCCGCgUGCCGg-CGC- -5'
29553 3' -63.2 NC_006151.1 + 56288 0.66 0.611207
Target:  5'- cCUGCCccGCGGCggaGGCGgACG-CCGCGc -3'
miRNA:   3'- uGAUGG--CGCUGg--CCGCgUGCcGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 52750 0.66 0.611207
Target:  5'- uGCUGCgCGCGcGCCucgcaGCGCAgcGCCGCGg -3'
miRNA:   3'- -UGAUG-GCGC-UGGc----CGCGUgcCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 19445 0.66 0.611207
Target:  5'- -----gGCGGCUcGCGCugGaGCCGCGg -3'
miRNA:   3'- ugauggCGCUGGcCGCGugC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 86549 0.66 0.610236
Target:  5'- gGCcGCCGUGGcgccguuCCGGCagcucucgGCGCGGgCGCGc -3'
miRNA:   3'- -UGaUGGCGCU-------GGCCG--------CGUGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 85907 0.66 0.608293
Target:  5'- --cGCCGUGGCCgugcaguacgaggaGGgGCugGGCCuGCu -3'
miRNA:   3'- ugaUGGCGCUGG--------------CCgCGugCCGG-CGc -5'
29553 3' -63.2 NC_006151.1 + 127451 0.66 0.60538
Target:  5'- --aGCCgGCGGCgcacgaagcgcugggCGGCGCggaACGaGCCGCGg -3'
miRNA:   3'- ugaUGG-CGCUG---------------GCCGCG---UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 64506 0.66 0.611207
Target:  5'- -----gGCGGCgGGCGCGCG-CCGCc -3'
miRNA:   3'- ugauggCGCUGgCCGCGUGCcGGCGc -5'
29553 3' -63.2 NC_006151.1 + 93674 0.66 0.611207
Target:  5'- gGCUGUCGCGcggGGCGCGCGcCCGCa -3'
miRNA:   3'- -UGAUGGCGCuggCCGCGUGCcGGCGc -5'
29553 3' -63.2 NC_006151.1 + 127566 0.66 0.611207
Target:  5'- --gGCCGCcGCCGGCGCcuCGuucGCCGUc -3'
miRNA:   3'- ugaUGGCGcUGGCCGCGu-GC---CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 109117 0.66 0.611207
Target:  5'- --aGCCGcCGGCCcGCGCccgcCGGCCGgGc -3'
miRNA:   3'- ugaUGGC-GCUGGcCGCGu---GCCGGCgC- -5'
29553 3' -63.2 NC_006151.1 + 100557 0.66 0.611207
Target:  5'- --cGCCGCccucacGGCCGGcCGCcuGCaGGCCGCc -3'
miRNA:   3'- ugaUGGCG------CUGGCC-GCG--UG-CCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 98398 0.66 0.611207
Target:  5'- cCUGCCGCgccuacgucgaGACgGGCaccuGCgagGCGGCCGUGc -3'
miRNA:   3'- uGAUGGCG-----------CUGgCCG----CG---UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 96579 0.66 0.611207
Target:  5'- cGCcGCCucGCGGCgcgaGGCGC-CGGgCGCGg -3'
miRNA:   3'- -UGaUGG--CGCUGg---CCGCGuGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 69438 0.66 0.611207
Target:  5'- --cGCCGCcGCCGuucGCGUccucGCGcGCCGCGg -3'
miRNA:   3'- ugaUGGCGcUGGC---CGCG----UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 67850 0.66 0.611207
Target:  5'- aGCaGCCcgGCGAgCCGGCGCcgaggUGGCgCGCGc -3'
miRNA:   3'- -UGaUGG--CGCU-GGCCGCGu----GCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 58927 0.66 0.611207
Target:  5'- --cGCCGCGGCCGucauaGCGCcgcaaaguccACGGCCcccucggugcGCGg -3'
miRNA:   3'- ugaUGGCGCUGGC-----CGCG----------UGCCGG----------CGC- -5'
29553 3' -63.2 NC_006151.1 + 19910 0.66 0.611207
Target:  5'- --aGCUGCG--CGGCGCGCagcagaaagGGCCGCa -3'
miRNA:   3'- ugaUGGCGCugGCCGCGUG---------CCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.