miRNA display CGI


Results 21 - 40 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 100052 0.76 0.151975
Target:  5'- aGCUGCaCGgGGUCGuGCGCGCGGCCGCc -3'
miRNA:   3'- -UGAUG-GCgCUGGC-CGCGUGCCGGCGc -5'
29553 3' -63.2 NC_006151.1 + 50330 0.76 0.155714
Target:  5'- gACgGCCGC--CCGGCGCcUGGCCGCGg -3'
miRNA:   3'- -UGaUGGCGcuGGCCGCGuGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 50004 0.76 0.159536
Target:  5'- gUUugCGCG-CCGcGCGCGCGGcCCGCGc -3'
miRNA:   3'- uGAugGCGCuGGC-CGCGUGCC-GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 84317 0.76 0.163443
Target:  5'- cGCgaugGCCGCGACC-GUGCGCGGCCuCGc -3'
miRNA:   3'- -UGa---UGGCGCUGGcCGCGUGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 65929 0.75 0.166228
Target:  5'- gGCgccCCGCcGCCGGCccaguccucgucgaGCGCGGCCGCGu -3'
miRNA:   3'- -UGau-GGCGcUGGCCG--------------CGUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 65311 0.75 0.167032
Target:  5'- gGCUGagcCCGCGGCCGuugaggaacacgaGCGCGCGGCCGa- -3'
miRNA:   3'- -UGAU---GGCGCUGGC-------------CGCGUGCCGGCgc -5'
29553 3' -63.2 NC_006151.1 + 64873 0.75 0.167435
Target:  5'- cGCUGCC-CGGCgGGaGCAgGGCCGCGa -3'
miRNA:   3'- -UGAUGGcGCUGgCCgCGUgCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 5084 0.75 0.167435
Target:  5'- cGCgggGCCGCGGCgGGCGCcggcggagACGGUgGCGg -3'
miRNA:   3'- -UGa--UGGCGCUGgCCGCG--------UGCCGgCGC- -5'
29553 3' -63.2 NC_006151.1 + 102757 0.75 0.167435
Target:  5'- aGCUGCCGCGcaaGCUGGCGCugAUGGUCgGCGa -3'
miRNA:   3'- -UGAUGGCGC---UGGCCGCG--UGCCGG-CGC- -5'
29553 3' -63.2 NC_006151.1 + 92206 0.75 0.170281
Target:  5'- cGCcGCCGCGGCCGcGCuggagcacgaugcuGCACGcGCCGCGc -3'
miRNA:   3'- -UGaUGGCGCUGGC-CG--------------CGUGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 118046 0.75 0.171515
Target:  5'- --gACCGUGACCGuGCGCGCcGcGCCGCu -3'
miRNA:   3'- ugaUGGCGCUGGC-CGCGUG-C-CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 99605 0.75 0.18429
Target:  5'- --cGCCGCGccggGCUGGCGCACaGcGCCGCGc -3'
miRNA:   3'- ugaUGGCGC----UGGCCGCGUG-C-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 106495 0.75 0.188732
Target:  5'- gACggGCCaGCGGCUGGCGCGCG-CCGUGc -3'
miRNA:   3'- -UGa-UGG-CGCUGGCCGCGUGCcGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 97617 0.75 0.188732
Target:  5'- uGC-ACCuGCGAgCGGCGCGCGGCCa-- -3'
miRNA:   3'- -UGaUGG-CGCUgGCCGCGUGCCGGcgc -5'
29553 3' -63.2 NC_006151.1 + 69748 0.74 0.197898
Target:  5'- cGCgGCCGCGACCgccggGGC-CACGcGCCGCGc -3'
miRNA:   3'- -UGaUGGCGCUGG-----CCGcGUGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 105682 0.74 0.197898
Target:  5'- cCUACgGCGGCgCGGgGCcgacgccggcGCGGCCGCGc -3'
miRNA:   3'- uGAUGgCGCUG-GCCgCG----------UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 57994 0.74 0.202626
Target:  5'- --cGCCGCgGACCGccuccgGCGCGGCCGCGg -3'
miRNA:   3'- ugaUGGCG-CUGGCcg----CGUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 81533 0.74 0.205993
Target:  5'- gGCgGCCGCGG-CGGCGCGCuccgcggugcacauGGCCGUGg -3'
miRNA:   3'- -UGaUGGCGCUgGCCGCGUG--------------CCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 104555 0.74 0.207451
Target:  5'- aGCUgGCCGCccUgGGCGCGCGGCgCGCGg -3'
miRNA:   3'- -UGA-UGGCGcuGgCCGCGUGCCG-GCGC- -5'
29553 3' -63.2 NC_006151.1 + 138081 0.74 0.207451
Target:  5'- --aACCGCGAggccuucuucgcCCGGCGCACG-CCGCu -3'
miRNA:   3'- ugaUGGCGCU------------GGCCGCGUGCcGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.