miRNA display CGI


Results 1 - 20 of 450 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29553 3' -63.2 NC_006151.1 + 141687 0.67 0.505562
Target:  5'- uCUGCCucccacgGCGGCUGGCG-GCGGaCGCGg -3'
miRNA:   3'- uGAUGG-------CGCUGGCCGCgUGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 141637 0.79 0.102337
Target:  5'- cGCUGCCGCGGC-GGCGCGgCGGggccCCGCGg -3'
miRNA:   3'- -UGAUGGCGCUGgCCGCGU-GCC----GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 141547 0.68 0.443911
Target:  5'- aGCUGCUGCGcgagaggguCCGGCGCGauccuccGCCGCu -3'
miRNA:   3'- -UGAUGGCGCu--------GGCCGCGUgc-----CGGCGc -5'
29553 3' -63.2 NC_006151.1 + 141405 0.67 0.515739
Target:  5'- gGCguguCCgGCGAUCGGUGCgggcGCGGCCcgGCGc -3'
miRNA:   3'- -UGau--GG-CGCUGGCCGCG----UGCCGG--CGC- -5'
29553 3' -63.2 NC_006151.1 + 139633 0.67 0.553387
Target:  5'- gGCcauCCgGCG-CCGGCGCGgGgGUCGCGg -3'
miRNA:   3'- -UGau-GG-CGCuGGCCGCGUgC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 139226 0.72 0.290365
Target:  5'- cGCUGCCGCacaucgcgcgcgucuCCGGCGCgACGGCCaCGc -3'
miRNA:   3'- -UGAUGGCGcu-------------GGCCGCG-UGCCGGcGC- -5'
29553 3' -63.2 NC_006151.1 + 138714 0.67 0.515739
Target:  5'- --cGCUGCGcGCCGcGCGCgggucguguacGCGcGCCGCGa -3'
miRNA:   3'- ugaUGGCGC-UGGC-CGCG-----------UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 138137 0.66 0.601499
Target:  5'- --gGCCGUggacgcggagGACCGGCGCGCgcucgaGGCCuucgugGCGg -3'
miRNA:   3'- ugaUGGCG----------CUGGCCGCGUG------CCGG------CGC- -5'
29553 3' -63.2 NC_006151.1 + 138081 0.74 0.207451
Target:  5'- --aACCGCGAggccuucuucgcCCGGCGCACG-CCGCu -3'
miRNA:   3'- ugaUGGCGCU------------GGCCGCGUGCcGGCGc -5'
29553 3' -63.2 NC_006151.1 + 137723 0.76 0.151606
Target:  5'- cCUGCCGUcgccguacgcgguGGCCGGCGCcgacACGGuCCGCGg -3'
miRNA:   3'- uGAUGGCG-------------CUGGCCGCG----UGCC-GGCGC- -5'
29553 3' -63.2 NC_006151.1 + 137355 0.67 0.506484
Target:  5'- --gGCCGa---CGGCGaCugGGCCGCGc -3'
miRNA:   3'- ugaUGGCgcugGCCGC-GugCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 137140 0.73 0.233084
Target:  5'- --cGgCGCGACgCGGCGCcggagAUGGCCGCGc -3'
miRNA:   3'- ugaUgGCGCUG-GCCGCG-----UGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 137064 0.71 0.326069
Target:  5'- -gUACCGCGuggaGCUGGCGCAcCGGCgccaggccuuCGCGg -3'
miRNA:   3'- ugAUGGCGC----UGGCCGCGU-GCCG----------GCGC- -5'
29553 3' -63.2 NC_006151.1 + 136980 0.68 0.461361
Target:  5'- gGCcGCCGCG-CCGG-GCgGCGGgCGCGc -3'
miRNA:   3'- -UGaUGGCGCuGGCCgCG-UGCCgGCGC- -5'
29553 3' -63.2 NC_006151.1 + 136835 0.68 0.46048
Target:  5'- gGCU-CUGCGACgCGGcCGCcggccucGCGcGCCGCGu -3'
miRNA:   3'- -UGAuGGCGCUG-GCC-GCG-------UGC-CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 136412 0.72 0.26133
Target:  5'- gGCUAcgcgcggggccCCGCGG-CGGCGCACG-CCGCGc -3'
miRNA:   3'- -UGAU-----------GGCGCUgGCCGCGUGCcGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 136273 0.66 0.591812
Target:  5'- ---cCCGCGGCCGGCcUACGaCCuGCGg -3'
miRNA:   3'- ugauGGCGCUGGCCGcGUGCcGG-CGC- -5'
29553 3' -63.2 NC_006151.1 + 135904 0.73 0.244062
Target:  5'- cGCcGCCGCGACCccggcggucGuGCGCGCGcucuGCCGCGg -3'
miRNA:   3'- -UGaUGGCGCUGG---------C-CGCGUGC----CGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 135576 0.67 0.528807
Target:  5'- gACUcCCGgaggcggaguuCGuCCGGCGgcucauaagcccuccCACGGCCGCGg -3'
miRNA:   3'- -UGAuGGC-----------GCuGGCCGC---------------GUGCCGGCGC- -5'
29553 3' -63.2 NC_006151.1 + 135477 0.7 0.362647
Target:  5'- aGCguguCCGCGcggGCCaggcGGCGCGCGGCCuCGg -3'
miRNA:   3'- -UGau--GGCGC---UGG----CCGCGUGCCGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.