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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29553 | 5' | -59.3 | NC_006151.1 | + | 118109 | 0.66 | 0.687701 |
Target: 5'- -cCGCGACC-UGCUgGCGCuGCuCGUGGc -3' miRNA: 3'- aaGCGCUGGcACGA-CGCG-CG-GUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 27200 | 0.66 | 0.687701 |
Target: 5'- -cCGCGcagaaggcGCCGggGCcccGCGCGCCGUGGa -3' miRNA: 3'- aaGCGC--------UGGCa-CGa--CGCGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 132170 | 0.66 | 0.687701 |
Target: 5'- -gCGCGGCCG-GCaccgGCGCGCCc---- -3' miRNA: 3'- aaGCGCUGGCaCGa---CGCGCGGuacua -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103745 | 0.66 | 0.687701 |
Target: 5'- -gCGCGGCaGUGCgaggaGCGCGCCGcGGc -3' miRNA: 3'- aaGCGCUGgCACGa----CGCGCGGUaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 49616 | 0.66 | 0.687701 |
Target: 5'- gUCcUGGCgGUGCUGCGCgaguggggguggGCCGUGGa -3' miRNA: 3'- aAGcGCUGgCACGACGCG------------CGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 113030 | 0.66 | 0.677541 |
Target: 5'- -aCGCGugCGccgggUGCUGCGCGgCGgcgGAg -3' miRNA: 3'- aaGCGCugGC-----ACGACGCGCgGUa--CUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 73396 | 0.66 | 0.677541 |
Target: 5'- -gCGCGGCCGccGCguacGCG-GCCGUGAa -3' miRNA: 3'- aaGCGCUGGCa-CGa---CGCgCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 57313 | 0.66 | 0.677541 |
Target: 5'- -gCGCGGCCGaagccGCUGCGCGaCggGAa -3' miRNA: 3'- aaGCGCUGGCa----CGACGCGCgGuaCUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 103225 | 0.66 | 0.674486 |
Target: 5'- -gCGCGugCGcgcgauggaggaccUGCUGCggcacauccGCGCCAUGGg -3' miRNA: 3'- aaGCGCugGC--------------ACGACG---------CGCGGUACUa -5' |
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29553 | 5' | -59.3 | NC_006151.1 | + | 64298 | 0.66 | 0.717868 |
Target: 5'- gUUGuCGGgCGUGCcgcaGCGCGCCGUGc- -3' miRNA: 3'- aAGC-GCUgGCACGa---CGCGCGGUACua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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