Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29553 | 5' | -59.3 | NC_006151.1 | + | 113589 | 0.7 | 0.476826 |
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Target: 5'- -cUGCGACCcc-CUGUGCGCCGUGGc -3' miRNA: 3'- aaGCGCUGGcacGACGCGCGGUACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 123894 | 0.7 | 0.448896 |
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Target: 5'- -cCGCGgccccGCCGUGCgGCGCggcgGCCGUGAc -3' miRNA: 3'- aaGCGC-----UGGCACGaCGCG----CGGUACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 4323 | 0.71 | 0.404446 |
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Target: 5'- -aCGCGGCCGgGCUGCGCGgCGg--- -3' miRNA: 3'- aaGCGCUGGCaCGACGCGCgGUacua -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 86319 | 0.71 | 0.404446 |
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Target: 5'- cUgGgGGCCGUGCUcgccCGCGCCGUGGg -3' miRNA: 3'- aAgCgCUGGCACGAc---GCGCGGUACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 65197 | 0.71 | 0.404446 |
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Target: 5'- -cCGCGAgCGcGCUGCGCgaguugaggGCCAUGAg -3' miRNA: 3'- aaGCGCUgGCaCGACGCG---------CGGUACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 112434 | 0.71 | 0.395894 |
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Target: 5'- -cCGCGccGCCGccGCcGCGCGCCAUGGg -3' miRNA: 3'- aaGCGC--UGGCa-CGaCGCGCGGUACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 118048 | 0.72 | 0.379145 |
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Target: 5'- -cCGUGACCGUGCgcgcCGCGCCGcUGGg -3' miRNA: 3'- aaGCGCUGGCACGac--GCGCGGU-ACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 103683 | 0.74 | 0.29581 |
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Target: 5'- -gCGCGGCggggGUGCUGCGCGCCGccgUGGa -3' miRNA: 3'- aaGCGCUGg---CACGACGCGCGGU---ACUa -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 85493 | 0.77 | 0.172921 |
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Target: 5'- -aCGCG-CCGcUGCUGCGCGCCAcGGUg -3' miRNA: 3'- aaGCGCuGGC-ACGACGCGCGGUaCUA- -5' |
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| 29553 | 5' | -59.3 | NC_006151.1 | + | 121180 | 0.79 | 0.123754 |
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Target: 5'- -aCGCGGCCGUGCUGCacGCGCUcgGGg -3' miRNA: 3'- aaGCGCUGGCACGACG--CGCGGuaCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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