miRNA display CGI


Results 41 - 60 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 13384 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 13665 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 115112 0.66 0.397722
Target:  5'- aGGCcgGCgCCGCCGGcgacgcGCGCgUGCgccucGGCCa -3'
miRNA:   3'- -UCGa-CG-GGCGGCC------CGUGgGCGa----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 101909 0.66 0.396924
Target:  5'- gAGCaUGCCCaagcggcGCC-GGCcCCCG-UGGCCg -3'
miRNA:   3'- -UCG-ACGGG-------CGGcCCGuGGGCgACCGG- -5'
29556 3' -66.9 NC_006151.1 + 58862 0.66 0.389787
Target:  5'- gAGCUcGCCCggcgcGCCGGGU--CCGUccaGGCCg -3'
miRNA:   3'- -UCGA-CGGG-----CGGCCCGugGGCGa--CCGG- -5'
29556 3' -66.9 NC_006151.1 + 27334 0.66 0.389787
Target:  5'- gGGCUGCUCcCCGGG-ACCgggguCGUgGGCCg -3'
miRNA:   3'- -UCGACGGGcGGCCCgUGG-----GCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 119429 0.66 0.389787
Target:  5'- cGCUGCgaCG-CGGGCACguUCGUgGGCCg -3'
miRNA:   3'- uCGACGg-GCgGCCCGUG--GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 140396 0.66 0.389787
Target:  5'- uGCUGCCCGaggacCUGGGgGacucgcccguCCCGCUGGa- -3'
miRNA:   3'- uCGACGGGC-----GGCCCgU----------GGGCGACCgg -5'
29556 3' -66.9 NC_006151.1 + 37980 0.66 0.389787
Target:  5'- uGCguccugGCCUGCCGcGGCguccucgagcGCCUGCUGcCCu -3'
miRNA:   3'- uCGa-----CGGGCGGC-CCG----------UGGGCGACcGG- -5'
29556 3' -66.9 NC_006151.1 + 84625 0.66 0.389787
Target:  5'- cGC-GgCCGCCGcGGCGCUggacaaCGCcaUGGCCg -3'
miRNA:   3'- uCGaCgGGCGGC-CCGUGG------GCG--ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 98551 0.66 0.389787
Target:  5'- cGGCcGCCCucaccgagGCCGGGCugC-GCaccucGGCCg -3'
miRNA:   3'- -UCGaCGGG--------CGGCCCGugGgCGa----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 55458 0.66 0.389787
Target:  5'- cGCcgGcCCCGCCgggGGGCGCgcgcccggcgCCGCggacGGCCa -3'
miRNA:   3'- uCGa-C-GGGCGG---CCCGUG----------GGCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 64289 0.66 0.389787
Target:  5'- gAGC-GCCgcguUGUCGGGCgugccgcagcgcGCCgUGCUGGCCu -3'
miRNA:   3'- -UCGaCGG----GCGGCCCG------------UGG-GCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 142716 0.66 0.389787
Target:  5'- cAGCUcuCCC-CCGGGCcCCCacaacucuCUGGCCg -3'
miRNA:   3'- -UCGAc-GGGcGGCCCGuGGGc-------GACCGG- -5'
29556 3' -66.9 NC_006151.1 + 134084 0.66 0.386642
Target:  5'- gAGCgaGCCCGUgaccguggacggaGGGCGgCUGCUGGUg -3'
miRNA:   3'- -UCGa-CGGGCGg------------CCCGUgGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 39437 0.66 0.385076
Target:  5'- cGC-GUCCGCCuGGacccggccgcccaguGCGCCgugCGCUGGCCc -3'
miRNA:   3'- uCGaCGGGCGG-CC---------------CGUGG---GCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 122542 0.66 0.381956
Target:  5'- cGUguuccgGCCCGCCucgcGGCGCCUGUacGCCg -3'
miRNA:   3'- uCGa-----CGGGCGGc---CCGUGGGCGacCGG- -5'
29556 3' -66.9 NC_006151.1 + 109233 0.66 0.381956
Target:  5'- cGGC-GCagacccagCCGCCGcGGUcUCCGCUGGCg -3'
miRNA:   3'- -UCGaCG--------GGCGGC-CCGuGGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 103455 0.66 0.381956
Target:  5'- cGGCcacGCCCguGCCGGGCacgguGCUCGC-GGCg -3'
miRNA:   3'- -UCGa--CGGG--CGGCCCG-----UGGGCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 134755 0.66 0.381956
Target:  5'- gAGCaGCgCGCgCGGG-GCCCGC-GGCUu -3'
miRNA:   3'- -UCGaCGgGCG-GCCCgUGGGCGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.