miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 40445 0.66 0.413081
Target:  5'- cGCuUGCCUcCCcGGCGCCUGCcuccccggcccggUGGCCc -3'
miRNA:   3'- uCG-ACGGGcGGcCCGUGGGCG-------------ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 73470 0.66 0.413081
Target:  5'- uGCaGCCCGCCGccgcucucGGUgcgcgccACCUGCaucUGGCCc -3'
miRNA:   3'- uCGaCGGGCGGC--------CCG-------UGGGCG---ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 75196 0.66 0.411447
Target:  5'- cGCUGCaugaGCCcgacgagggcgucgGGGCGCgCGUcGGCCa -3'
miRNA:   3'- uCGACGgg--CGG--------------CCCGUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 30579 0.66 0.40657
Target:  5'- cGCgGcCCCGUCGGGCGCagggaucguagcaaaCGCgGGCg -3'
miRNA:   3'- uCGaC-GGGCGGCCCGUGg--------------GCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 23962 0.66 0.40576
Target:  5'- gAGCU-CCCGagGGGC-CUCuCUGGCCa -3'
miRNA:   3'- -UCGAcGGGCggCCCGuGGGcGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 32995 0.66 0.40576
Target:  5'- aGGCUGUUgGCUguGGGUugucggcuguuGgCCGUUGGCCg -3'
miRNA:   3'- -UCGACGGgCGG--CCCG-----------UgGGCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 105912 0.66 0.40576
Target:  5'- uGCUGUgcaCCGacgaGGGCGCCgaGCUGcGCCc -3'
miRNA:   3'- uCGACG---GGCgg--CCCGUGGg-CGAC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 121021 0.66 0.40576
Target:  5'- uGGUguuUGaCCGCaCGcGGCACUuugUGCUGGCCu -3'
miRNA:   3'- -UCG---ACgGGCG-GC-CCGUGG---GCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 130766 0.66 0.40576
Target:  5'- uGGCcaggaagGuCCCGUCGGGCAugucgcgcgUCCaGCUGGCg -3'
miRNA:   3'- -UCGa------C-GGGCGGCCCGU---------GGG-CGACCGg -5'
29556 3' -66.9 NC_006151.1 + 1828 0.66 0.40576
Target:  5'- aGGCaaGCgCCGCCGGGCcgaggggaCCGa-GGCCg -3'
miRNA:   3'- -UCGa-CG-GGCGGCCCGug------GGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 22847 0.66 0.404952
Target:  5'- cGCUGCCCaggaaGCCcaggagcagggcgGGGCugCCGgUGGg- -3'
miRNA:   3'- uCGACGGG-----CGG-------------CCCGugGGCgACCgg -5'
29556 3' -66.9 NC_006151.1 + 16906 0.66 0.402533
Target:  5'- cGC-GCCCGCCccGGCGCCgGCgcacgucgccccgGGUCa -3'
miRNA:   3'- uCGaCGGGCGGc-CCGUGGgCGa------------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 13665 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 13384 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 87526 0.66 0.397722
Target:  5'- cGC-GCCCGCCucGGCcccccagccGCCCGUccaGGCCu -3'
miRNA:   3'- uCGaCGGGCGGc-CCG---------UGGGCGa--CCGG- -5'
29556 3' -66.9 NC_006151.1 + 76866 0.66 0.397722
Target:  5'- cAGCcGCgCCGCCGccaGGagccccagcgcCGCCUGCUGcGCCg -3'
miRNA:   3'- -UCGaCG-GGCGGC---CC-----------GUGGGCGAC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 38899 0.66 0.397722
Target:  5'- -aCUGCCCGcCCGaGGUgGCCCGCgccucgUGGaCCa -3'
miRNA:   3'- ucGACGGGC-GGC-CCG-UGGGCG------ACC-GG- -5'
29556 3' -66.9 NC_006151.1 + 2855 0.66 0.397722
Target:  5'- uGGUaGUCCcccacgGCCGGGCcguCCGCgGGCCa -3'
miRNA:   3'- -UCGaCGGG------CGGCCCGug-GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 121944 0.66 0.397722
Target:  5'- cGCUGgCCGCCGccGGCGacgaCGCcgaGGCCu -3'
miRNA:   3'- uCGACgGGCGGC--CCGUgg--GCGa--CCGG- -5'
29556 3' -66.9 NC_006151.1 + 102048 0.66 0.397722
Target:  5'- gAGCUGgcCCCGCuCGaccuGgGCCCGCUgcaGGCCc -3'
miRNA:   3'- -UCGAC--GGGCG-GCc---CgUGGGCGA---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.