miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 6226 0.66 0.381956
Target:  5'- gAGgaGCCgcggCGCCGGGaGCCCugGCUGccGCCg -3'
miRNA:   3'- -UCgaCGG----GCGGCCCgUGGG--CGAC--CGG- -5'
29556 3' -66.9 NC_006151.1 + 6774 0.69 0.277506
Target:  5'- uGCaUGCCCgGCCcaagauGGCGgCCGCcGGCCa -3'
miRNA:   3'- uCG-ACGGG-CGGc-----CCGUgGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 7039 0.68 0.316325
Target:  5'- cGGCUcGCCCggGCCaauGGGCGCgCGgaGGCg -3'
miRNA:   3'- -UCGA-CGGG--CGG---CCCGUGgGCgaCCGg -5'
29556 3' -66.9 NC_006151.1 + 8347 0.66 0.422139
Target:  5'- cGC-GCCCGCCGGaCGCggaggCGCgaGGCCc -3'
miRNA:   3'- uCGaCGGGCGGCCcGUGg----GCGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 9037 0.72 0.150737
Target:  5'- ---cGCCCGCCgGGGCGCCCcgcgugcuccggggGCgccGGCCg -3'
miRNA:   3'- ucgaCGGGCGG-CCCGUGGG--------------CGa--CCGG- -5'
29556 3' -66.9 NC_006151.1 + 10489 0.71 0.201791
Target:  5'- gAGCcGCCCGgCGcGCGCCCGCc-GCCg -3'
miRNA:   3'- -UCGaCGGGCgGCcCGUGGGCGacCGG- -5'
29556 3' -66.9 NC_006151.1 + 11024 0.76 0.086284
Target:  5'- cGCUcGCUCGCCGGGCcgGCCgGCcgggGGCCc -3'
miRNA:   3'- uCGA-CGGGCGGCCCG--UGGgCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 11335 0.71 0.201791
Target:  5'- gGGCgauaCCGCgCGGGcCGCCCGCgGGCg -3'
miRNA:   3'- -UCGacg-GGCG-GCCC-GUGGGCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 11506 0.69 0.271418
Target:  5'- uGCUGCCC-CCGcccCGCCCGCggcacuccgGGCCc -3'
miRNA:   3'- uCGACGGGcGGCcc-GUGGGCGa--------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 13384 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 13420 0.73 0.141224
Target:  5'- gAGCcggGCCCGCgucccCGGG-GCCCGCauUGGCCg -3'
miRNA:   3'- -UCGa--CGGGCG-----GCCCgUGGGCG--ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 13665 0.66 0.397722
Target:  5'- cGGCa-CCCGCCuccGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGacGGGCGG---CCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 13945 0.67 0.33722
Target:  5'- gGGCggGCgCC-CCGGGgACgCGCcGGCCa -3'
miRNA:   3'- -UCGa-CG-GGcGGCCCgUGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 14071 0.69 0.265438
Target:  5'- uGGCgGCCCgGCCGacGGCACUCGCc-GCCc -3'
miRNA:   3'- -UCGaCGGG-CGGC--CCGUGGGCGacCGG- -5'
29556 3' -66.9 NC_006151.1 + 15883 0.71 0.187657
Target:  5'- cGCcGCCCGCCGGgggacgcGCGCCCcgacGC-GGCCc -3'
miRNA:   3'- uCGaCGGGCGGCC-------CGUGGG----CGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 16906 0.66 0.402533
Target:  5'- cGC-GCCCGCCccGGCGCCgGCgcacgucgccccgGGUCa -3'
miRNA:   3'- uCGaCGGGCGGc-CCGUGGgCGa------------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 17093 0.69 0.277506
Target:  5'- aGGCgcgcGCCCGUCgGGGCGCCgGg-GGCUc -3'
miRNA:   3'- -UCGa---CGGGCGG-CCCGUGGgCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 17708 0.68 0.309581
Target:  5'- aGGCUGCUgugugCGCCcGGGUGCgCCGg-GGCCc -3'
miRNA:   3'- -UCGACGG-----GCGG-CCCGUG-GGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 18409 0.7 0.237129
Target:  5'- cGCUGucCCCGCCGGGggaggagggcCGCCgGCgGGCg -3'
miRNA:   3'- uCGAC--GGGCGGCCC----------GUGGgCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 18528 0.67 0.351698
Target:  5'- cGCguccccGCCCGCgucGGCACCCGgaacGGCCg -3'
miRNA:   3'- uCGa-----CGGGCGgc-CCGUGGGCga--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.