miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 739 0.67 0.344404
Target:  5'- gGGCU-UCCGCucCGcGGCGCCCGCcccauUGGCUc -3'
miRNA:   3'- -UCGAcGGGCG--GC-CCGUGGGCG-----ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 1828 0.66 0.40576
Target:  5'- aGGCaaGCgCCGCCGGGCcgaggggaCCGa-GGCCg -3'
miRNA:   3'- -UCGa-CG-GGCGGCCCGug------GGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 2177 0.7 0.216341
Target:  5'- gGGCcgGCCCcggcgcCCGaGGCcCCCGCgGGCCg -3'
miRNA:   3'- -UCGa-CGGGc-----GGC-CCGuGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 2275 0.77 0.074231
Target:  5'- gAGCacgGCCgGCgGGGCGCCCGCggcGGCg -3'
miRNA:   3'- -UCGa--CGGgCGgCCCGUGGGCGa--CCGg -5'
29556 3' -66.9 NC_006151.1 + 2855 0.66 0.397722
Target:  5'- uGGUaGUCCcccacgGCCGGGCcguCCGCgGGCCa -3'
miRNA:   3'- -UCGaCGGG------CGGCCCGug-GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 3471 0.69 0.265438
Target:  5'- gGGCauggGCCCGagCGGGCGCCggaGCcGGUCg -3'
miRNA:   3'- -UCGa---CGGGCg-GCCCGUGGg--CGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 3872 0.71 0.186337
Target:  5'- gGGC-GCCCGCCGccgccGGCGCCgGCgcugggacgacgaGGCCg -3'
miRNA:   3'- -UCGaCGGGCGGC-----CCGUGGgCGa------------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 3930 0.71 0.19257
Target:  5'- gAGCggggGCagGCCGGGCGCgggcuCCGCgGGCCc -3'
miRNA:   3'- -UCGa---CGggCGGCCCGUG-----GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 3983 0.69 0.242581
Target:  5'- cGGCgaGCCgGCCGcGGC-CaCGUUGGCCg -3'
miRNA:   3'- -UCGa-CGGgCGGC-CCGuGgGCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 4307 0.67 0.359101
Target:  5'- cGCcaGCUCGCgGGGCACgCgGCcgGGCUg -3'
miRNA:   3'- uCGa-CGGGCGgCCCGUG-GgCGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 4781 0.69 0.277506
Target:  5'- gGGCacggGCCCgGCCGcGGCGCgguagcgggCCGC-GGCCu -3'
miRNA:   3'- -UCGa---CGGG-CGGC-CCGUG---------GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 4937 0.75 0.092758
Target:  5'- cAGCgGCCCGUcggucggCGGGgGCCCGUcGGCCa -3'
miRNA:   3'- -UCGaCGGGCG-------GCCCgUGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5084 0.68 0.29513
Target:  5'- cGCgggGCCgCGgCGGGCGCCgGCggagacgguggcGGCCc -3'
miRNA:   3'- uCGa--CGG-GCgGCCCGUGGgCGa-----------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 5377 0.66 0.422139
Target:  5'- gGGCUGUCUcuGCgGgGGCGCCCcgccguccccgGCgaGGCCg -3'
miRNA:   3'- -UCGACGGG--CGgC-CCGUGGG-----------CGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 5625 0.69 0.253798
Target:  5'- gGGCgccGCcgCCGCCGGGCGCCgaGaCcGGCCc -3'
miRNA:   3'- -UCGa--CG--GGCGGCCCGUGGg-C-GaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5713 0.68 0.31429
Target:  5'- cGCUGCUggcugugcugguggCGCCGGGguccgaggcCGCgCCGCcGGCCc -3'
miRNA:   3'- uCGACGG--------------GCGGCCC---------GUG-GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5808 0.68 0.290007
Target:  5'- gGGCUGCCgagggGCCGGGagaGCCggaggaGgaGGCCg -3'
miRNA:   3'- -UCGACGGg----CGGCCCg--UGGg-----CgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5867 0.7 0.237129
Target:  5'- gAGCgcccggGgCCGCCGGGgGCCC-C-GGCCu -3'
miRNA:   3'- -UCGa-----CgGGCGGCCCgUGGGcGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5997 0.66 0.374231
Target:  5'- ---aGCCCGaCCGGGgGaCCCGgC-GGCCg -3'
miRNA:   3'- ucgaCGGGC-GGCCCgU-GGGC-GaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 6074 0.66 0.373464
Target:  5'- cGCccgaGCCCcgGCgGGGCugCUGCUgcugcugGGCCg -3'
miRNA:   3'- uCGa---CGGG--CGgCCCGugGGCGA-------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.