miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 142716 0.66 0.389787
Target:  5'- cAGCUcuCCC-CCGGGCcCCCacaacucuCUGGCCg -3'
miRNA:   3'- -UCGAc-GGGcGGCCCGuGGGc-------GACCGG- -5'
29556 3' -66.9 NC_006151.1 + 141637 0.69 0.259565
Target:  5'- cGCUGCCgCggcggcgcgGCgGGGC-CCCGCgGGCUc -3'
miRNA:   3'- uCGACGG-G---------CGgCCCGuGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 141602 0.66 0.422139
Target:  5'- gAGCcGCCCGgCGaGGCugCCGggaucgGGCg -3'
miRNA:   3'- -UCGaCGGGCgGC-CCGugGGCga----CCGg -5'
29556 3' -66.9 NC_006151.1 + 140396 0.66 0.389787
Target:  5'- uGCUGCCCGaggacCUGGGgGacucgcccguCCCGCUGGa- -3'
miRNA:   3'- uCGACGGGC-----GGCCCgU----------GGGCGACCgg -5'
29556 3' -66.9 NC_006151.1 + 139607 0.75 0.092989
Target:  5'- cGGCgGCCCGuCCGGGCGCggCUGggGGCCa -3'
miRNA:   3'- -UCGaCGGGC-GGCCCGUG--GGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 139463 0.69 0.242581
Target:  5'- cGCcGCCCGCCaccuGCACaCCGC-GGCCc -3'
miRNA:   3'- uCGaCGGGCGGcc--CGUG-GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 139075 0.66 0.374231
Target:  5'- gAGCUcggGCuCCGCCuGGGgGCgCGCaUGGCg -3'
miRNA:   3'- -UCGA---CG-GGCGG-CCCgUGgGCG-ACCGg -5'
29556 3' -66.9 NC_006151.1 + 138609 0.67 0.347309
Target:  5'- cGCUGCCgcucggcgaggacgcCGCCGGGgGCgCGCcggacugggaGGCCu -3'
miRNA:   3'- uCGACGG---------------GCGGCCCgUGgGCGa---------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 138492 0.72 0.163153
Target:  5'- uGCUcCUCGgCGGGCGCCCGCUGcaCCu -3'
miRNA:   3'- uCGAcGGGCgGCCCGUGGGCGACc-GG- -5'
29556 3' -66.9 NC_006151.1 + 138323 0.78 0.06332
Target:  5'- cAGCUGCCUG-CGGGCccggcacgcgcgcaGCCCGCcGGCCc -3'
miRNA:   3'- -UCGACGGGCgGCCCG--------------UGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 138084 0.7 0.237129
Target:  5'- cGCgagGCCuucuuCGcCCGGcGCACgCCGCUGGCg -3'
miRNA:   3'- uCGa--CGG-----GC-GGCC-CGUG-GGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 137921 0.71 0.206544
Target:  5'- cGGCUGCCa--CGGGCGCCUGCUccCCu -3'
miRNA:   3'- -UCGACGGgcgGCCCGUGGGCGAccGG- -5'
29556 3' -66.9 NC_006151.1 + 137671 0.73 0.144681
Target:  5'- gAGC-GCCCGCCGugcGGCugCCGCgccaagaugGGCUu -3'
miRNA:   3'- -UCGaCGGGCGGC---CCGugGGCGa--------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 137400 0.72 0.155522
Target:  5'- cGcCUGCCCGCCgggGGGCGCCCuCgccGCCg -3'
miRNA:   3'- uC-GACGGGCGG---CCCGUGGGcGac-CGG- -5'
29556 3' -66.9 NC_006151.1 + 137273 0.67 0.359101
Target:  5'- cGgUGCCCG-CGGGCACgCUcgagGC-GGCCa -3'
miRNA:   3'- uCgACGGGCgGCCCGUG-GG----CGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 137043 0.66 0.374231
Target:  5'- cGCgUGCCCcccggcGCCGGuGUACCgcguggaGCUGGCg -3'
miRNA:   3'- uCG-ACGGG------CGGCC-CGUGGg------CGACCGg -5'
29556 3' -66.9 NC_006151.1 + 137006 0.72 0.155522
Target:  5'- cGC-GCacggCGCUGGGCGCCCuGCUcGGCCu -3'
miRNA:   3'- uCGaCGg---GCGGCCCGUGGG-CGA-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 136641 0.7 0.23178
Target:  5'- cGGC-GCCCGUgGGGCGCUCGCcccUcggggagcgcgcGGCCg -3'
miRNA:   3'- -UCGaCGGGCGgCCCGUGGGCG---A------------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 136400 0.7 0.23178
Target:  5'- uGCUGCCugagcggcuacgCGCgGGGC-CCCGCggcGGCg -3'
miRNA:   3'- uCGACGG------------GCGgCCCGuGGGCGa--CCGg -5'
29556 3' -66.9 NC_006151.1 + 136063 0.73 0.147859
Target:  5'- cGGCaacGCCgaguacgCGCCGGaGCGCCCGCUGcGCUc -3'
miRNA:   3'- -UCGa--CGG-------GCGGCC-CGUGGGCGAC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.