miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 106372 0.85 0.018612
Target:  5'- gGGCgcgcGCCCGCCGcGGCGCCCGCUGcGCg -3'
miRNA:   3'- -UCGa---CGGGCGGC-CCGUGGGCGAC-CGg -5'
29556 3' -66.9 NC_006151.1 + 73203 0.8 0.040338
Target:  5'- uGCUGCCCGCgggccaggcccgCGGGCACCUGgggcagcauCUGGCCg -3'
miRNA:   3'- uCGACGGGCG------------GCCCGUGGGC---------GACCGG- -5'
29556 3' -66.9 NC_006151.1 + 32557 0.8 0.044686
Target:  5'- cGCU-CCCGucucCCGGGCACCCGC-GGCCg -3'
miRNA:   3'- uCGAcGGGC----GGCCCGUGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 37175 0.79 0.048244
Target:  5'- cGGC-GCCCGCCGcGGC-CCCGC-GGCCc -3'
miRNA:   3'- -UCGaCGGGCGGC-CCGuGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 81380 0.78 0.057652
Target:  5'- cAGCgcgaGCCgCGCCGcGGCGCCCagGUUGGCCa -3'
miRNA:   3'- -UCGa---CGG-GCGGC-CCGUGGG--CGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 64776 0.78 0.062208
Target:  5'- gGGCUGgUUGCCgGGGCGCgaGCUGGCCa -3'
miRNA:   3'- -UCGACgGGCGG-CCCGUGggCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 138323 0.78 0.06332
Target:  5'- cAGCUGCCUG-CGGGCccggcacgcgcgcaGCCCGCcGGCCc -3'
miRNA:   3'- -UCGACGGGCgGCCCG--------------UGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 95337 0.77 0.068136
Target:  5'- cGCcGCCCGCCaGGCACgcgggcagguucaCGCUGGCCa -3'
miRNA:   3'- uCGaCGGGCGGcCCGUGg------------GCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 135164 0.77 0.070585
Target:  5'- gGGCgcgGCCCGgaCGGGCGCCgGCUGccGCCg -3'
miRNA:   3'- -UCGa--CGGGCg-GCCCGUGGgCGAC--CGG- -5'
29556 3' -66.9 NC_006151.1 + 86191 0.77 0.074231
Target:  5'- cGCUGCCC-CCGGcGgGCCCGCUGcCCa -3'
miRNA:   3'- uCGACGGGcGGCC-CgUGGGCGACcGG- -5'
29556 3' -66.9 NC_006151.1 + 94667 0.77 0.074231
Target:  5'- cGGgUGCCCGgCGGGCAgcucCCCGaaGGCCg -3'
miRNA:   3'- -UCgACGGGCgGCCCGU----GGGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 2275 0.77 0.074231
Target:  5'- gAGCacgGCCgGCgGGGCGCCCGCggcGGCg -3'
miRNA:   3'- -UCGa--CGGgCGgCCCGUGGGCGa--CCGg -5'
29556 3' -66.9 NC_006151.1 + 39107 0.77 0.076121
Target:  5'- gAGCUcugcgccgaGCCCGCCgaGGGCGcCCCGCgcccGGCCu -3'
miRNA:   3'- -UCGA---------CGGGCGG--CCCGU-GGGCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 78721 0.76 0.078058
Target:  5'- cGGC-GCCCGUgGGGCGCgCGCUgcGGCCc -3'
miRNA:   3'- -UCGaCGGGCGgCCCGUGgGCGA--CCGG- -5'
29556 3' -66.9 NC_006151.1 + 28557 0.76 0.084153
Target:  5'- gAGCcgUGCCCGCguccCGGGaGCCCGCauUGGCCg -3'
miRNA:   3'- -UCG--ACGGGCG----GCCCgUGGGCG--ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 55012 0.76 0.084153
Target:  5'- gGGCgcaaGCCCGCCgagGGGCACCCgGCcGGCg -3'
miRNA:   3'- -UCGa---CGGGCGG---CCCGUGGG-CGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 11024 0.76 0.086284
Target:  5'- cGCUcGCUCGCCGGGCcgGCCgGCcgggGGCCc -3'
miRNA:   3'- uCGA-CGGGCGGCCCG--UGGgCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 109112 0.76 0.090701
Target:  5'- aGGCgagCCGCCGGcccGCGCCCGCcGGCCg -3'
miRNA:   3'- -UCGacgGGCGGCC---CGUGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 4937 0.75 0.092758
Target:  5'- cAGCgGCCCGUcggucggCGGGgGCCCGUcGGCCa -3'
miRNA:   3'- -UCGaCGGGCG-------GCCCgUGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 139607 0.75 0.092989
Target:  5'- cGGCgGCCCGuCCGGGCGCggCUGggGGCCa -3'
miRNA:   3'- -UCGaCGGGC-GGCCCGUG--GGCgaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.