miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 139607 0.75 0.092989
Target:  5'- cGGCgGCCCGuCCGGGCGCggCUGggGGCCa -3'
miRNA:   3'- -UCGaCGGGC-GGCCCGUG--GGCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 109993 0.75 0.095332
Target:  5'- cGCgaGCCCGCCGaggaGGCGCCCgaGCUGGaCCc -3'
miRNA:   3'- uCGa-CGGGCGGC----CCGUGGG--CGACC-GG- -5'
29556 3' -66.9 NC_006151.1 + 59127 0.75 0.09773
Target:  5'- cAGCUGCCgGUgGguGGCGCCCGCgGGCg -3'
miRNA:   3'- -UCGACGGgCGgC--CCGUGGGCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 98395 0.75 0.100186
Target:  5'- uGGcCUGCCgCGCCuacgucgagacGGGCACCUGCgaggcGGCCg -3'
miRNA:   3'- -UC-GACGG-GCGG-----------CCCGUGGGCGa----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 40238 0.75 0.107906
Target:  5'- uGCUGCuCCGCUgagcgGGGCGCCCcCUcGGCCc -3'
miRNA:   3'- uCGACG-GGCGG-----CCCGUGGGcGA-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 26333 0.75 0.107906
Target:  5'- gGGCgagGCCCGCCucacgGGGCGgCgGCgGGCCg -3'
miRNA:   3'- -UCGa--CGGGCGG-----CCCGUgGgCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 106802 0.74 0.110601
Target:  5'- cGGCggUGCUCGUCgGGGC-CCCGCUGGUg -3'
miRNA:   3'- -UCG--ACGGGCGG-CCCGuGGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 95837 0.74 0.110601
Target:  5'- cGCacacGCCCGUgGGGCGCUCGCugucgcuguugaUGGCCg -3'
miRNA:   3'- uCGa---CGGGCGgCCCGUGGGCG------------ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 106509 0.74 0.113359
Target:  5'- uGGCgcgcGCCgUGCCGGGCGC--GCUGGCCa -3'
miRNA:   3'- -UCGa---CGG-GCGGCCCGUGggCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 120321 0.74 0.115896
Target:  5'- gGGCaGCCucucggaCGCCGcGcGCGCCCGCgUGGCCg -3'
miRNA:   3'- -UCGaCGG-------GCGGC-C-CGUGGGCG-ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 126136 0.74 0.119069
Target:  5'- gGGC-GCUCGCCaucGGGCugCUgguGCUGGCCg -3'
miRNA:   3'- -UCGaCGGGCGG---CCCGugGG---CGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 67987 0.74 0.119069
Target:  5'- cGGCgGCCCGCC-GGCG-CCGC-GGCCa -3'
miRNA:   3'- -UCGaCGGGCGGcCCGUgGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 39769 0.74 0.119069
Target:  5'- cGCggGCgCCGCCuucGGGCACCgCGC-GGCCa -3'
miRNA:   3'- uCGa-CG-GGCGG---CCCGUGG-GCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 39919 0.74 0.122024
Target:  5'- gGGCUGCUggagcccgaCGCCGaGGCcgcCCCGCUGGUg -3'
miRNA:   3'- -UCGACGG---------GCGGC-CCGu--GGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 125225 0.74 0.125046
Target:  5'- cGGCcGCCCGUCGGGC-CCgGCgcucccccGGCCc -3'
miRNA:   3'- -UCGaCGGGCGGCCCGuGGgCGa-------CCGG- -5'
29556 3' -66.9 NC_006151.1 + 49155 0.73 0.128138
Target:  5'- cGGCUGCCUggagGCCuGGGCGCgCCGCggGGUg -3'
miRNA:   3'- -UCGACGGG----CGG-CCCGUG-GGCGa-CCGg -5'
29556 3' -66.9 NC_006151.1 + 75094 0.73 0.128138
Target:  5'- aGGCgcaggucgGCgUUGCCGGGCGCCagcaGCUGGUCg -3'
miRNA:   3'- -UCGa-------CG-GGCGGCCCGUGGg---CGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 96863 0.73 0.1313
Target:  5'- cGC-GCCCGCCGGGCGCggcgCGCgcgggGGCa -3'
miRNA:   3'- uCGaCGGGCGGCCCGUGg---GCGa----CCGg -5'
29556 3' -66.9 NC_006151.1 + 97304 0.73 0.1313
Target:  5'- gAGCcgGCCCGUCGGGCagcGCgCGCUGcGCg -3'
miRNA:   3'- -UCGa-CGGGCGGCCCG---UGgGCGAC-CGg -5'
29556 3' -66.9 NC_006151.1 + 56555 0.73 0.134534
Target:  5'- uGCUcgGCCUGCCGGGCgacgcgccgccGCCCGacgGGCUg -3'
miRNA:   3'- uCGA--CGGGCGGCCCG-----------UGGGCga-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.