miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 138813 0.91 0.04019
Target:  5'- cGCGGCCUUCGuGUACGcgcGCCAGGAGCg -3'
miRNA:   3'- -UGCCGGAAGCuCAUGC---UGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 17128 0.76 0.33063
Target:  5'- gGCGGUgCUgCGGGagGCGGCCAGGAGCa -3'
miRNA:   3'- -UGCCG-GAaGCUCa-UGCUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 141166 0.73 0.484329
Target:  5'- gGCGGUCUUCGGGguaGCGGCagucGGGGCa -3'
miRNA:   3'- -UGCCGGAAGCUCa--UGCUGgu--CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 139608 0.73 0.484329
Target:  5'- gGCGGCCcgucCGGGcGCGGCUGGGGGCc -3'
miRNA:   3'- -UGCCGGaa--GCUCaUGCUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 137093 0.72 0.552757
Target:  5'- -aGGCCUUCGcGGUGCuGGCCGGGGacGCc -3'
miRNA:   3'- ugCCGGAAGC-UCAUG-CUGGUCCU--CGa -5'
29556 5' -56.8 NC_006151.1 + 124673 0.72 0.562794
Target:  5'- uACGGCCUgcgCGAGgg-GGCCcacgGGGAGCa -3'
miRNA:   3'- -UGCCGGAa--GCUCaugCUGG----UCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 64535 0.71 0.572878
Target:  5'- cGCGGCCgcgUCGGGgGCGGCgAGGccguGGCg -3'
miRNA:   3'- -UGCCGGa--AGCUCaUGCUGgUCC----UCGa -5'
29556 5' -56.8 NC_006151.1 + 118975 0.71 0.572878
Target:  5'- cGCcGCCggCGuGUACGACgAGGAGCc -3'
miRNA:   3'- -UGcCGGaaGCuCAUGCUGgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 76265 0.71 0.61357
Target:  5'- gACGGCgaUCGAGaagGCGGCguugaGGGAGCg -3'
miRNA:   3'- -UGCCGgaAGCUCa--UGCUGg----UCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 6289 0.7 0.654481
Target:  5'- uCGGCCgcggCGGcgGCcGCCAGGAGCUg -3'
miRNA:   3'- uGCCGGaa--GCUcaUGcUGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 24908 0.7 0.654481
Target:  5'- cGCGGCCcucCGAGccCGACUgcAGGGGCUg -3'
miRNA:   3'- -UGCCGGaa-GCUCauGCUGG--UCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 17096 0.7 0.664684
Target:  5'- cGCGcGCCcgUCGGG-GCG-CCGGGGGCUc -3'
miRNA:   3'- -UGC-CGGa-AGCUCaUGCuGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 53752 0.7 0.664684
Target:  5'- aGCGGC--UCGAGUACGccGCCGaGAGCUu -3'
miRNA:   3'- -UGCCGgaAGCUCAUGC--UGGUcCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 96687 0.7 0.664684
Target:  5'- gGCGGCg-UCGAGgaaUGCGuccgcGCCGGGGGCg -3'
miRNA:   3'- -UGCCGgaAGCUC---AUGC-----UGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 3975 0.7 0.674861
Target:  5'- gGCGGCCUcggCGAGccggccGCGGCCAcguuggccGGGGCg -3'
miRNA:   3'- -UGCCGGAa--GCUCa-----UGCUGGU--------CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 46529 0.69 0.685004
Target:  5'- -aGGCCUcCGAGUccgcggACGACCAGaGGCc -3'
miRNA:   3'- ugCCGGAaGCUCA------UGCUGGUCcUCGa -5'
29556 5' -56.8 NC_006151.1 + 133316 0.69 0.715132
Target:  5'- gGCGGCCcgugUCGAG-GCGcGCCGGGcGGCc -3'
miRNA:   3'- -UGCCGGa---AGCUCaUGC-UGGUCC-UCGa -5'
29556 5' -56.8 NC_006151.1 + 128062 0.69 0.715132
Target:  5'- gGCGGCUgcgCGGGgGCGACCgacAGGaAGCg -3'
miRNA:   3'- -UGCCGGaa-GCUCaUGCUGG---UCC-UCGa -5'
29556 5' -56.8 NC_006151.1 + 10019 0.69 0.725046
Target:  5'- gGCGGCggUCGcc-GCGGCCAGGAGg- -3'
miRNA:   3'- -UGCCGgaAGCucaUGCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 84336 0.69 0.725046
Target:  5'- cGCGGCCUcgcCGAGUACGucGCCGGcccgcGGCg -3'
miRNA:   3'- -UGCCGGAa--GCUCAUGC--UGGUCc----UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.