miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 648 0.68 0.754269
Target:  5'- cCGGCUUcCGGGgcGCGGCCGGG-GCg -3'
miRNA:   3'- uGCCGGAaGCUCa-UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 3975 0.7 0.674861
Target:  5'- gGCGGCCUcggCGAGccggccGCGGCCAcguuggccGGGGCg -3'
miRNA:   3'- -UGCCGGAa--GCUCa-----UGCUGGU--------CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 4208 0.68 0.773229
Target:  5'- -gGGCC--CGAGgGCGGCCGGGGcGCg -3'
miRNA:   3'- ugCCGGaaGCUCaUGCUGGUCCU-CGa -5'
29556 5' -56.8 NC_006151.1 + 5891 0.69 0.734879
Target:  5'- cCGGCCUcugccgcugCGAGUGCuGCCGGGgucGGCg -3'
miRNA:   3'- uGCCGGAa--------GCUCAUGcUGGUCC---UCGa -5'
29556 5' -56.8 NC_006151.1 + 6289 0.7 0.654481
Target:  5'- uCGGCCgcggCGGcgGCcGCCAGGAGCUg -3'
miRNA:   3'- uGCCGGaa--GCUcaUGcUGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 10019 0.69 0.725046
Target:  5'- gGCGGCggUCGcc-GCGGCCAGGAGg- -3'
miRNA:   3'- -UGCCGgaAGCucaUGCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 12304 0.66 0.874039
Target:  5'- cGCGGUC--CGAGcuCGGCCAGGAGa- -3'
miRNA:   3'- -UGCCGGaaGCUCauGCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 14644 0.68 0.770415
Target:  5'- gGCGGCCgggcUCGGGUccgguuccgggucgGCGuCgGGGAGCc -3'
miRNA:   3'- -UGCCGGa---AGCUCA--------------UGCuGgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 15446 0.66 0.851314
Target:  5'- cGCGGCUcggugugCGAGgACGACgGGGAGg- -3'
miRNA:   3'- -UGCCGGaa-----GCUCaUGCUGgUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 17096 0.7 0.664684
Target:  5'- cGCGcGCCcgUCGGG-GCG-CCGGGGGCUc -3'
miRNA:   3'- -UGC-CGGa-AGCUCaUGCuGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 17128 0.76 0.33063
Target:  5'- gGCGGUgCUgCGGGagGCGGCCAGGAGCa -3'
miRNA:   3'- -UGCCG-GAaGCUCa-UGCUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 18555 0.68 0.773229
Target:  5'- aACGGCCg-CGAGgccgcccgGCGG-CGGGAGCa -3'
miRNA:   3'- -UGCCGGaaGCUCa-------UGCUgGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 19872 0.67 0.788951
Target:  5'- -gGGCCUcggUgGAGaGCGccagggccagcagcGCCAGGAGCUg -3'
miRNA:   3'- ugCCGGA---AgCUCaUGC--------------UGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 21072 0.66 0.874039
Target:  5'- gGCGGCCa--GGGUcaggGCGGCgAGGAGg- -3'
miRNA:   3'- -UGCCGGaagCUCA----UGCUGgUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 21392 0.67 0.826803
Target:  5'- gACGGCCggCGGG-GCGA--AGGGGCg -3'
miRNA:   3'- -UGCCGGaaGCUCaUGCUggUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 21428 0.66 0.859096
Target:  5'- -gGGCC-UCGGGggucGCGGCguGGGGUg -3'
miRNA:   3'- ugCCGGaAGCUCa---UGCUGguCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 21474 0.66 0.859096
Target:  5'- cGCGucGCCggcUCGGGcagGCGGCCGgGGGGCg -3'
miRNA:   3'- -UGC--CGGa--AGCUCa--UGCUGGU-CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 24908 0.7 0.654481
Target:  5'- cGCGGCCcucCGAGccCGACUgcAGGGGCUg -3'
miRNA:   3'- -UGCCGGaa-GCUCauGCUGG--UCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 33136 0.68 0.754269
Target:  5'- -gGGCCgagugucgggCGAGUGCGAggcgggUCGGGGGCg -3'
miRNA:   3'- ugCCGGaa--------GCUCAUGCU------GGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 39773 0.67 0.808686
Target:  5'- gGCGccGCCUUCGGGcaccgcGCGGCCaaccgcuGGGGGCUc -3'
miRNA:   3'- -UGC--CGGAAGCUCa-----UGCUGG-------UCCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.