miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 141988 0.68 0.773229
Target:  5'- gGCGGCCcgggaaaaaGAGcGCGGCguGGGGCg -3'
miRNA:   3'- -UGCCGGaag------CUCaUGCUGguCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 141166 0.73 0.484329
Target:  5'- gGCGGUCUUCGGGguaGCGGCagucGGGGCa -3'
miRNA:   3'- -UGCCGGAAGCUCa--UGCUGgu--CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 139608 0.73 0.484329
Target:  5'- gGCGGCCcgucCGGGcGCGGCUGGGGGCc -3'
miRNA:   3'- -UGCCGGaa--GCUCaUGCUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 138813 0.91 0.04019
Target:  5'- cGCGGCCUUCGuGUACGcgcGCCAGGAGCg -3'
miRNA:   3'- -UGCCGGAAGCuCAUGC---UGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 138604 0.69 0.734879
Target:  5'- cGCGGCgCUgccgcucggCGAGgACGccGCCGGGGGCg -3'
miRNA:   3'- -UGCCG-GAa--------GCUCaUGC--UGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 137093 0.72 0.552757
Target:  5'- -aGGCCUUCGcGGUGCuGGCCGGGGacGCc -3'
miRNA:   3'- ugCCGGAAGC-UCAUG-CUGGUCCU--CGa -5'
29556 5' -56.8 NC_006151.1 + 136062 0.67 0.809565
Target:  5'- cCGGCaacgcCGAGUACGcGCC-GGAGCg -3'
miRNA:   3'- uGCCGgaa--GCUCAUGC-UGGuCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 133471 0.66 0.866673
Target:  5'- -aGGCCcgCGAG-GCGGCCGcGGGCg -3'
miRNA:   3'- ugCCGGaaGCUCaUGCUGGUcCUCGa -5'
29556 5' -56.8 NC_006151.1 + 133382 0.69 0.734879
Target:  5'- gGCGGCCg--GGGcgGCGGCCGGG-GCc -3'
miRNA:   3'- -UGCCGGaagCUCa-UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 133316 0.69 0.715132
Target:  5'- gGCGGCCcgugUCGAG-GCGcGCCGGGcGGCc -3'
miRNA:   3'- -UGCCGGa---AGCUCaUGC-UGGUCC-UCGa -5'
29556 5' -56.8 NC_006151.1 + 128062 0.69 0.715132
Target:  5'- gGCGGCUgcgCGGGgGCGACCgacAGGaAGCg -3'
miRNA:   3'- -UGCCGGaa-GCUCaUGCUGG---UCC-UCGa -5'
29556 5' -56.8 NC_006151.1 + 124673 0.72 0.562794
Target:  5'- uACGGCCUgcgCGAGgg-GGCCcacgGGGAGCa -3'
miRNA:   3'- -UGCCGGAa--GCUCaugCUGG----UCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 124164 0.68 0.763807
Target:  5'- -aGGCCUgcccCGAGUACu-CgCAGGGGCg -3'
miRNA:   3'- ugCCGGAa---GCUCAUGcuG-GUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 123755 0.68 0.763807
Target:  5'- gGCGGUCUUUG-GcGCGGgccCCGGGGGCa -3'
miRNA:   3'- -UGCCGGAAGCuCaUGCU---GGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 123123 0.67 0.83516
Target:  5'- gGCGaGCCUggCGcAGUGCGugCGcGAGCa -3'
miRNA:   3'- -UGC-CGGAa-GC-UCAUGCugGUcCUCGa -5'
29556 5' -56.8 NC_006151.1 + 122692 0.66 0.846548
Target:  5'- gGCGGCCguggagcucgcgcucUUCGGGcgGCGGCCc-GAGCa -3'
miRNA:   3'- -UGCCGG---------------AAGCUCa-UGCUGGucCUCGa -5'
29556 5' -56.8 NC_006151.1 + 118975 0.71 0.572878
Target:  5'- cGCcGCCggCGuGUACGACgAGGAGCc -3'
miRNA:   3'- -UGcCGGaaGCuCAUGCUGgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 118176 0.66 0.881189
Target:  5'- cGCGGCCUgaccgUCGAGgcCGGCUucgccGGGCa -3'
miRNA:   3'- -UGCCGGA-----AGCUCauGCUGGuc---CUCGa -5'
29556 5' -56.8 NC_006151.1 + 113085 0.66 0.851314
Target:  5'- cGCGGCCgUCGccgccGCcACCGGGGGCg -3'
miRNA:   3'- -UGCCGGaAGCuca--UGcUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 107272 0.67 0.825957
Target:  5'- cCGGCCaccUCGGaggagcuGUACGGCCGGccGAGCUu -3'
miRNA:   3'- uGCCGGa--AGCU-------CAUGCUGGUC--CUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.