miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 39342 0.66 0.876396
Target:  5'- gGCUCgGCGCG-GcGCGGCGCCggCUc- -3'
miRNA:   3'- -UGAG-CGCGCaCaUGUCGCGGuaGGuc -5'
29557 3' -56.8 NC_006151.1 + 89247 0.66 0.876396
Target:  5'- ---gGCGuCGUGUcgAGCGCCGUCguGg -3'
miRNA:   3'- ugagCGC-GCACAugUCGCGGUAGguC- -5'
29557 3' -56.8 NC_006151.1 + 90463 0.66 0.876396
Target:  5'- gACUCGaGCGc--GCAGCGCCAgcauggcucgCCGGg -3'
miRNA:   3'- -UGAGCgCGCacaUGUCGCGGUa---------GGUC- -5'
29557 3' -56.8 NC_006151.1 + 57508 0.66 0.876396
Target:  5'- cGCUCGgcCGCGgcgGCGGCGgCCGccUCCGGc -3'
miRNA:   3'- -UGAGC--GCGCacaUGUCGC-GGU--AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 137704 0.66 0.869079
Target:  5'- gGCUUcCGCGUGUGCAcGCccuGCCGUCg-- -3'
miRNA:   3'- -UGAGcGCGCACAUGU-CG---CGGUAGguc -5'
29557 3' -56.8 NC_006151.1 + 87731 0.66 0.869079
Target:  5'- -gUCGCGC-UGUACA-CGCCGUCg-- -3'
miRNA:   3'- ugAGCGCGcACAUGUcGCGGUAGguc -5'
29557 3' -56.8 NC_006151.1 + 81586 0.66 0.869079
Target:  5'- uCUCGCGCGcGUcgcCGGgGCCG-CCGGc -3'
miRNA:   3'- uGAGCGCGCaCAu--GUCgCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 72301 0.66 0.869079
Target:  5'- --aCGCGCGUGaugACggccgcgaAGCGCCG-CCGGu -3'
miRNA:   3'- ugaGCGCGCACa--UG--------UCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 66524 0.66 0.869079
Target:  5'- gGCUCGCGCGc--GCcGCGCUcUUCGGg -3'
miRNA:   3'- -UGAGCGCGCacaUGuCGCGGuAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 58151 0.66 0.869079
Target:  5'- gGC-CGCGUGccaccggcgGUAgAGCGCCA-CCAGc -3'
miRNA:   3'- -UGaGCGCGCa--------CAUgUCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 129691 0.66 0.861547
Target:  5'- gGC-CGC-CGUGgaccGCGGCGCCGagCAGg -3'
miRNA:   3'- -UGaGCGcGCACa---UGUCGCGGUagGUC- -5'
29557 3' -56.8 NC_006151.1 + 22787 0.66 0.861547
Target:  5'- cCUCGCGCacGUGCuGgGCCGUCUc- -3'
miRNA:   3'- uGAGCGCGcaCAUGuCgCGGUAGGuc -5'
29557 3' -56.8 NC_006151.1 + 74131 0.66 0.853808
Target:  5'- -gUUGCGCGgGUGCAGCgggugccggggGUCGUCCGu -3'
miRNA:   3'- ugAGCGCGCaCAUGUCG-----------CGGUAGGUc -5'
29557 3' -56.8 NC_006151.1 + 21968 0.66 0.853808
Target:  5'- -aUCG-GCGUgGUGCGGCGCCGg-CAGc -3'
miRNA:   3'- ugAGCgCGCA-CAUGUCGCGGUagGUC- -5'
29557 3' -56.8 NC_006151.1 + 50014 0.66 0.853808
Target:  5'- cGCgCGCGCGgcccGcGCGGCGCCc-CCGGg -3'
miRNA:   3'- -UGaGCGCGCa---CaUGUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 132794 0.66 0.853023
Target:  5'- -gUCGCugaugagGCGcugGUACAGCGC-GUCCGGg -3'
miRNA:   3'- ugAGCG-------CGCa--CAUGUCGCGgUAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 105712 0.66 0.845867
Target:  5'- gGC-CGCGCGccucgACGGCGCCGUgCGc -3'
miRNA:   3'- -UGaGCGCGCaca--UGUCGCGGUAgGUc -5'
29557 3' -56.8 NC_006151.1 + 83131 0.66 0.845867
Target:  5'- aGCUCGgGCGccuUGUAC-GCGCCAaagagggugUCCuGg -3'
miRNA:   3'- -UGAGCgCGC---ACAUGuCGCGGU---------AGGuC- -5'
29557 3' -56.8 NC_006151.1 + 93596 0.66 0.83773
Target:  5'- gGCUCGCGCcgaUGgccUGCAGCaGCCgGUCCGc -3'
miRNA:   3'- -UGAGCGCGc--AC---AUGUCG-CGG-UAGGUc -5'
29557 3' -56.8 NC_006151.1 + 68833 0.66 0.83773
Target:  5'- --gCGCcgGCGUGUGCucgaGGCGCCgcgcgacgcGUCCAGc -3'
miRNA:   3'- ugaGCG--CGCACAUG----UCGCGG---------UAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.