miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 139589 0.7 0.646871
Target:  5'- gGCUCGCGCccccccgaGCGGCGgcCCGUCCGGg -3'
miRNA:   3'- -UGAGCGCGcaca----UGUCGC--GGUAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 137704 0.66 0.869079
Target:  5'- gGCUUcCGCGUGUGCAcGCccuGCCGUCg-- -3'
miRNA:   3'- -UGAGcGCGCACAUGU-CG---CGGUAGguc -5'
29557 3' -56.8 NC_006151.1 + 136937 0.68 0.757014
Target:  5'- aGC-CGgGCGccgACGGCGCCGUCCu- -3'
miRNA:   3'- -UGaGCgCGCacaUGUCGCGGUAGGuc -5'
29557 3' -56.8 NC_006151.1 + 135756 0.69 0.687701
Target:  5'- uCUCGUacGCGUGggACGGCGCCGggCUGGa -3'
miRNA:   3'- uGAGCG--CGCACa-UGUCGCGGUa-GGUC- -5'
29557 3' -56.8 NC_006151.1 + 132794 0.66 0.853023
Target:  5'- -gUCGCugaugagGCGcugGUACAGCGC-GUCCGGg -3'
miRNA:   3'- ugAGCG-------CGCa--CAUGUCGCGgUAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 132136 0.67 0.812225
Target:  5'- aGCUCGCGCcggcgGUGguugACGGCGCgCAgcugcgcggCCGGc -3'
miRNA:   3'- -UGAGCGCG-----CACa---UGUCGCG-GUa--------GGUC- -5'
29557 3' -56.8 NC_006151.1 + 130791 0.7 0.657117
Target:  5'- -gUCGCGCGUccagcuggcGUAC-GCGgCGUCCGGg -3'
miRNA:   3'- ugAGCGCGCA---------CAUGuCGCgGUAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 130727 0.7 0.636613
Target:  5'- gGCcCGCGCGgccgcgGcGCAGCGCCAcCCAc -3'
miRNA:   3'- -UGaGCGCGCa-----CaUGUCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 130340 0.67 0.820902
Target:  5'- aGCUCGCGCGcc-GCGGCGUCGUg--- -3'
miRNA:   3'- -UGAGCGCGCacaUGUCGCGGUAgguc -5'
29557 3' -56.8 NC_006151.1 + 129691 0.66 0.861547
Target:  5'- gGC-CGC-CGUGgaccGCGGCGCCGagCAGg -3'
miRNA:   3'- -UGaGCGcGCACa---UGUCGCGGUagGUC- -5'
29557 3' -56.8 NC_006151.1 + 124850 0.68 0.747371
Target:  5'- cGCg-GCGCGUGUGCAGC-CUggCCAa -3'
miRNA:   3'- -UGagCGCGCACAUGUCGcGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 122393 0.68 0.766546
Target:  5'- cGCgggCGCGCGcugGCGGCGCUcgCCGc -3'
miRNA:   3'- -UGa--GCGCGCacaUGUCGCGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 117740 0.66 0.835253
Target:  5'- cGCUCGUcccacGCGgagGUGCgaAGCGCCGgccgagguauaggcUCCGGg -3'
miRNA:   3'- -UGAGCG-----CGCa--CAUG--UCGCGGU--------------AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 117621 0.68 0.762747
Target:  5'- gGCUCGCGCGcgagcgugcccacGUGCAcgccGCGCUGcUCCGGg -3'
miRNA:   3'- -UGAGCGCGCa------------CAUGU----CGCGGU-AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 115601 0.74 0.413114
Target:  5'- aGCUCGCGCGUGgccCAGCG-CGUCUg- -3'
miRNA:   3'- -UGAGCGCGCACau-GUCGCgGUAGGuc -5'
29557 3' -56.8 NC_006151.1 + 107097 0.67 0.785241
Target:  5'- -gUCGCGCGUGcucugGGCGCCGcCCGa -3'
miRNA:   3'- ugAGCGCGCACaug--UCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 105712 0.66 0.845867
Target:  5'- gGC-CGCGCGccucgACGGCGCCGUgCGc -3'
miRNA:   3'- -UGaGCGCGCaca--UGUCGCGGUAgGUc -5'
29557 3' -56.8 NC_006151.1 + 104017 0.67 0.812225
Target:  5'- cGC-CGCGCGgcggagGUggagcgcgcGCAGCGCCAgcUCUGGg -3'
miRNA:   3'- -UGaGCGCGCa-----CA---------UGUCGCGGU--AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 102939 0.73 0.495915
Target:  5'- gGCUgCGCGCGcUGgacGCGGCGCCcgCCGc -3'
miRNA:   3'- -UGA-GCGCGC-ACa--UGUCGCGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 102812 0.71 0.585425
Target:  5'- cGCggCGCGCa-GUACAGCGCCAaggCCAu -3'
miRNA:   3'- -UGa-GCGCGcaCAUGUCGCGGUa--GGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.