miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 99912 0.67 0.803383
Target:  5'- gACgugggCGCGCGacUACGGCGCCggCCu- -3'
miRNA:   3'- -UGa----GCGCGCacAUGUCGCGGuaGGuc -5'
29557 3' -56.8 NC_006151.1 + 97989 0.68 0.737626
Target:  5'- uCUUGCcgggcgGCGUGgccgcguagGCGGCGCCggCCAGg -3'
miRNA:   3'- uGAGCG------CGCACa--------UGUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 97289 0.67 0.803383
Target:  5'- gGCggCGgGCGUGUugAGCcgGCCcgUCGGg -3'
miRNA:   3'- -UGa-GCgCGCACAugUCG--CGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 96558 0.71 0.595623
Target:  5'- cACggCGCGCGUGauaaACAGCGCCG-CCu- -3'
miRNA:   3'- -UGa-GCGCGCACa---UGUCGCGGUaGGuc -5'
29557 3' -56.8 NC_006151.1 + 96326 0.7 0.632508
Target:  5'- gGC-CGCGCGcGUAgAGCGCCGgguaggccucccgCCAGa -3'
miRNA:   3'- -UGaGCGCGCaCAUgUCGCGGUa------------GGUC- -5'
29557 3' -56.8 NC_006151.1 + 95603 0.69 0.72383
Target:  5'- uACUCGCGCGcaaagucgggcccGUGCAGCGagg-CCAGg -3'
miRNA:   3'- -UGAGCGCGCa------------CAUGUCGCgguaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 94752 0.7 0.666322
Target:  5'- cACUCGCGCGgaaACAgGCGCCGcagcgucUCCAu -3'
miRNA:   3'- -UGAGCGCGCacaUGU-CGCGGU-------AGGUc -5'
29557 3' -56.8 NC_006151.1 + 94041 0.69 0.677541
Target:  5'- cGCUCGCGCGcc-GCGGCGUCG-CCGc -3'
miRNA:   3'- -UGAGCGCGCacaUGUCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 93596 0.66 0.83773
Target:  5'- gGCUCGCGCcgaUGgccUGCAGCaGCCgGUCCGc -3'
miRNA:   3'- -UGAGCGCGc--AC---AUGUCG-CGG-UAGGUc -5'
29557 3' -56.8 NC_006151.1 + 90463 0.66 0.876396
Target:  5'- gACUCGaGCGc--GCAGCGCCAgcauggcucgCCGGg -3'
miRNA:   3'- -UGAGCgCGCacaUGUCGCGGUa---------GGUC- -5'
29557 3' -56.8 NC_006151.1 + 89247 0.66 0.876396
Target:  5'- ---gGCGuCGUGUcgAGCGCCGUCguGg -3'
miRNA:   3'- ugagCGC-GCACAugUCGCGGUAGguC- -5'
29557 3' -56.8 NC_006151.1 + 87731 0.66 0.869079
Target:  5'- -gUCGCGC-UGUACA-CGCCGUCg-- -3'
miRNA:   3'- ugAGCGCGcACAUGUcGCGGUAGguc -5'
29557 3' -56.8 NC_006151.1 + 85799 0.8 0.19125
Target:  5'- --gCGCGCGcGUGCAGCGCCA-CCAGc -3'
miRNA:   3'- ugaGCGCGCaCAUGUCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 83767 0.71 0.585425
Target:  5'- gGCUCGgGCacGUACAGCGCCccgCCGa -3'
miRNA:   3'- -UGAGCgCGcaCAUGUCGCGGua-GGUc -5'
29557 3' -56.8 NC_006151.1 + 83131 0.66 0.845867
Target:  5'- aGCUCGgGCGccuUGUAC-GCGCCAaagagggugUCCuGg -3'
miRNA:   3'- -UGAGCgCGC---ACAUGuCGCGGU---------AGGuC- -5'
29557 3' -56.8 NC_006151.1 + 82524 0.68 0.737626
Target:  5'- cGCggaugCGCGUGUcGUugAGCGCCc-CCAGc -3'
miRNA:   3'- -UGa----GCGCGCA-CAugUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 82354 0.67 0.785241
Target:  5'- cGC-CGUG-GUGUACGuGCGCCGgacgCCGGg -3'
miRNA:   3'- -UGaGCGCgCACAUGU-CGCGGUa---GGUC- -5'
29557 3' -56.8 NC_006151.1 + 81586 0.66 0.869079
Target:  5'- uCUCGCGCGcGUcgcCGGgGCCG-CCGGc -3'
miRNA:   3'- uGAGCGCGCaCAu--GUCgCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 77222 0.71 0.604825
Target:  5'- cGC-CGCGUGUGUGCgccgggaGGCGCCccCCGGc -3'
miRNA:   3'- -UGaGCGCGCACAUG-------UCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 74131 0.66 0.853808
Target:  5'- -gUUGCGCGgGUGCAGCgggugccggggGUCGUCCGu -3'
miRNA:   3'- ugAGCGCGCaCAUGUCG-----------CGGUAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.