miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 66524 0.66 0.869079
Target:  5'- gGCUCGCGCGc--GCcGCGCUcUUCGGg -3'
miRNA:   3'- -UGAGCGCGCacaUGuCGCGGuAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 67509 0.69 0.717868
Target:  5'- gGCUCGCGUccggGUcCAGgGCCA-CCAGg -3'
miRNA:   3'- -UGAGCGCGca--CAuGUCgCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 68259 0.68 0.766546
Target:  5'- gACgCGCGCGgcgacgGUcGCGGCGCCGggcgCCAc -3'
miRNA:   3'- -UGaGCGCGCa-----CA-UGUCGCGGUa---GGUc -5'
29557 3' -56.8 NC_006151.1 + 68833 0.66 0.83773
Target:  5'- --gCGCcgGCGUGUGCucgaGGCGCCgcgcgacgcGUCCAGc -3'
miRNA:   3'- ugaGCG--CGCACAUG----UCGCGG---------UAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 69419 0.69 0.717868
Target:  5'- aGCUCGuCGCGccagGCGGCGCCG-CCGc -3'
miRNA:   3'- -UGAGC-GCGCaca-UGUCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 69643 0.73 0.495915
Target:  5'- --cCGCGCGU--GCGGCGCCG-CCGGg -3'
miRNA:   3'- ugaGCGCGCAcaUGUCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 69880 0.71 0.565136
Target:  5'- aGCUCGCGCGcgcccacgcGCAGCGCCG-CCGu -3'
miRNA:   3'- -UGAGCGCGCaca------UGUCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 71813 0.7 0.667344
Target:  5'- aGCUCGCGCGU----GGCGCUGcCCAGc -3'
miRNA:   3'- -UGAGCGCGCAcaugUCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 72091 0.67 0.8007
Target:  5'- aGCUCGCGgGccUGggcgagcgGCAGCGUCAuggggaagcgcagcUCCAGg -3'
miRNA:   3'- -UGAGCGCgC--ACa-------UGUCGCGGU--------------AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 72301 0.66 0.869079
Target:  5'- --aCGCGCGUGaugACggccgcgaAGCGCCG-CCGGu -3'
miRNA:   3'- ugaGCGCGCACa--UG--------UCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 72380 0.68 0.775958
Target:  5'- cGCgcagCGuCGCGUGccgccGCAGCGUC-UCCAGa -3'
miRNA:   3'- -UGa---GC-GCGCACa----UGUCGCGGuAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 74131 0.66 0.853808
Target:  5'- -gUUGCGCGgGUGCAGCgggugccggggGUCGUCCGu -3'
miRNA:   3'- ugAGCGCGCaCAUGUCG-----------CGGUAGGUc -5'
29557 3' -56.8 NC_006151.1 + 77222 0.71 0.604825
Target:  5'- cGC-CGCGUGUGUGCgccgggaGGCGCCccCCGGc -3'
miRNA:   3'- -UGaGCGCGCACAUG-------UCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 81586 0.66 0.869079
Target:  5'- uCUCGCGCGcGUcgcCGGgGCCG-CCGGc -3'
miRNA:   3'- uGAGCGCGCaCAu--GUCgCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 82354 0.67 0.785241
Target:  5'- cGC-CGUG-GUGUACGuGCGCCGgacgCCGGg -3'
miRNA:   3'- -UGaGCGCgCACAUGU-CGCGGUa---GGUC- -5'
29557 3' -56.8 NC_006151.1 + 82524 0.68 0.737626
Target:  5'- cGCggaugCGCGUGUcGUugAGCGCCc-CCAGc -3'
miRNA:   3'- -UGa----GCGCGCA-CAugUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 83131 0.66 0.845867
Target:  5'- aGCUCGgGCGccuUGUAC-GCGCCAaagagggugUCCuGg -3'
miRNA:   3'- -UGAGCgCGC---ACAUGuCGCGGU---------AGGuC- -5'
29557 3' -56.8 NC_006151.1 + 83767 0.71 0.585425
Target:  5'- gGCUCGgGCacGUACAGCGCCccgCCGa -3'
miRNA:   3'- -UGAGCgCGcaCAUGUCGCGGua-GGUc -5'
29557 3' -56.8 NC_006151.1 + 85799 0.8 0.19125
Target:  5'- --gCGCGCGcGUGCAGCGCCA-CCAGc -3'
miRNA:   3'- ugaGCGCGCaCAUGUCGCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 87731 0.66 0.869079
Target:  5'- -gUCGCGC-UGUACA-CGCCGUCg-- -3'
miRNA:   3'- ugAGCGCGcACAUGUcGCGGUAGguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.