miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 135756 0.69 0.687701
Target:  5'- uCUCGUacGCGUGggACGGCGCCGggCUGGa -3'
miRNA:   3'- uGAGCG--CGCACa-UGUCGCGGUa-GGUC- -5'
29557 3' -56.8 NC_006151.1 + 52069 0.69 0.707874
Target:  5'- --aCGaGCGUGUagcuguccgucuGCAGCGCCGUCgAGa -3'
miRNA:   3'- ugaGCgCGCACA------------UGUCGCGGUAGgUC- -5'
29557 3' -56.8 NC_006151.1 + 62047 0.69 0.717868
Target:  5'- cGC-CGCGUGgcgGUGCAcgcgcGCGCCGUCguGa -3'
miRNA:   3'- -UGaGCGCGCa--CAUGU-----CGCGGUAGguC- -5'
29557 3' -56.8 NC_006151.1 + 69419 0.69 0.717868
Target:  5'- aGCUCGuCGCGccagGCGGCGCCG-CCGc -3'
miRNA:   3'- -UGAGC-GCGCaca-UGUCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 67509 0.69 0.717868
Target:  5'- gGCUCGCGUccggGUcCAGgGCCA-CCAGg -3'
miRNA:   3'- -UGAGCGCGca--CAuGUCgCGGUaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 95603 0.69 0.72383
Target:  5'- uACUCGCGCGcaaagucgggcccGUGCAGCGagg-CCAGg -3'
miRNA:   3'- -UGAGCGCGCa------------CAUGUCGCgguaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 58735 0.69 0.727788
Target:  5'- cGCUCGCGuCGc--GCAGCGCCGcggCCAc -3'
miRNA:   3'- -UGAGCGC-GCacaUGUCGCGGUa--GGUc -5'
29557 3' -56.8 NC_006151.1 + 82524 0.68 0.737626
Target:  5'- cGCggaugCGCGUGUcGUugAGCGCCc-CCAGc -3'
miRNA:   3'- -UGa----GCGCGCA-CAugUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 97989 0.68 0.737626
Target:  5'- uCUUGCcgggcgGCGUGgccgcguagGCGGCGCCggCCAGg -3'
miRNA:   3'- uGAGCG------CGCACa--------UGUCGCGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 124850 0.68 0.747371
Target:  5'- cGCg-GCGCGUGUGCAGC-CUggCCAa -3'
miRNA:   3'- -UGagCGCGCACAUGUCGcGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 17339 0.68 0.747371
Target:  5'- aGCUCGUGCGUcucgguggugauGUagaACGGCGCCGUggggUCGGa -3'
miRNA:   3'- -UGAGCGCGCA------------CA---UGUCGCGGUA----GGUC- -5'
29557 3' -56.8 NC_006151.1 + 2482 0.68 0.747371
Target:  5'- gGC-CGCGCG-GUgcccgaagGCGGCGCCcgcgucaaaGUCCGGg -3'
miRNA:   3'- -UGaGCGCGCaCA--------UGUCGCGG---------UAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 136937 0.68 0.757014
Target:  5'- aGC-CGgGCGccgACGGCGCCGUCCu- -3'
miRNA:   3'- -UGaGCgCGCacaUGUCGCGGUAGGuc -5'
29557 3' -56.8 NC_006151.1 + 117621 0.68 0.762747
Target:  5'- gGCUCGCGCGcgagcgugcccacGUGCAcgccGCGCUGcUCCGGg -3'
miRNA:   3'- -UGAGCGCGCa------------CAUGU----CGCGGU-AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 122393 0.68 0.766546
Target:  5'- cGCgggCGCGCGcugGCGGCGCUcgCCGc -3'
miRNA:   3'- -UGa--GCGCGCacaUGUCGCGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 68259 0.68 0.766546
Target:  5'- gACgCGCGCGgcgacgGUcGCGGCGCCGggcgCCAc -3'
miRNA:   3'- -UGaGCGCGCa-----CA-UGUCGCGGUa---GGUc -5'
29557 3' -56.8 NC_006151.1 + 17405 0.68 0.775958
Target:  5'- cGCguggCGCGCGgcaGCAGgGCCAgcgagCCGGg -3'
miRNA:   3'- -UGa---GCGCGCacaUGUCgCGGUa----GGUC- -5'
29557 3' -56.8 NC_006151.1 + 72380 0.68 0.775958
Target:  5'- cGCgcagCGuCGCGUGccgccGCAGCGUC-UCCAGa -3'
miRNA:   3'- -UGa---GC-GCGCACa----UGUCGCGGuAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 18690 0.67 0.78247
Target:  5'- cACgggCGCGCGg--GCGGCGCCggcgucgugacgccGUCCAc -3'
miRNA:   3'- -UGa--GCGCGCacaUGUCGCGG--------------UAGGUc -5'
29557 3' -56.8 NC_006151.1 + 107097 0.67 0.785241
Target:  5'- -gUCGCGCGUGcucugGGCGCCGcCCGa -3'
miRNA:   3'- ugAGCGCGCACaug--UCGCGGUaGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.