Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 107097 | 0.67 | 0.785241 |
Target: 5'- -gUCGCGCGUGcucugGGCGCCGcCCGa -3' miRNA: 3'- ugAGCGCGCACaug--UCGCGGUaGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 72091 | 0.67 | 0.8007 |
Target: 5'- aGCUCGCGgGccUGggcgagcgGCAGCGUCAuggggaagcgcagcUCCAGg -3' miRNA: 3'- -UGAGCGCgC--ACa-------UGUCGCGGU--------------AGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 97289 | 0.67 | 0.803383 |
Target: 5'- gGCggCGgGCGUGUugAGCcgGCCcgUCGGg -3' miRNA: 3'- -UGa-GCgCGCACAugUCG--CGGuaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 99912 | 0.67 | 0.803383 |
Target: 5'- gACgugggCGCGCGacUACGGCGCCggCCu- -3' miRNA: 3'- -UGa----GCGCGCacAUGUCGCGGuaGGuc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 104017 | 0.67 | 0.812225 |
Target: 5'- cGC-CGCGCGgcggagGUggagcgcgcGCAGCGCCAgcUCUGGg -3' miRNA: 3'- -UGaGCGCGCa-----CA---------UGUCGCGGU--AGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 132136 | 0.67 | 0.812225 |
Target: 5'- aGCUCGCGCcggcgGUGguugACGGCGCgCAgcugcgcggCCGGc -3' miRNA: 3'- -UGAGCGCG-----CACa---UGUCGCG-GUa--------GGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 5125 | 0.67 | 0.812225 |
Target: 5'- gGCgCGgGCGaGUGgGGCGCCGggCCGGa -3' miRNA: 3'- -UGaGCgCGCaCAUgUCGCGGUa-GGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 49244 | 0.67 | 0.820902 |
Target: 5'- cGCUCggcuggGCGCGgcucGUGC-GCGCCgucGUCCAGc -3' miRNA: 3'- -UGAG------CGCGCa---CAUGuCGCGG---UAGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 130340 | 0.67 | 0.820902 |
Target: 5'- aGCUCGCGCGcc-GCGGCGUCGUg--- -3' miRNA: 3'- -UGAGCGCGCacaUGUCGCGGUAgguc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 50469 | 0.67 | 0.829406 |
Target: 5'- cGCUCGCGCcaGcGCGGCGCgAccgagCCGGa -3' miRNA: 3'- -UGAGCGCGcaCaUGUCGCGgUa----GGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 117740 | 0.66 | 0.835253 |
Target: 5'- cGCUCGUcccacGCGgagGUGCgaAGCGCCGgccgagguauaggcUCCGGg -3' miRNA: 3'- -UGAGCG-----CGCa--CAUG--UCGCGGU--------------AGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 93596 | 0.66 | 0.83773 |
Target: 5'- gGCUCGCGCcgaUGgccUGCAGCaGCCgGUCCGc -3' miRNA: 3'- -UGAGCGCGc--AC---AUGUCG-CGG-UAGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 68833 | 0.66 | 0.83773 |
Target: 5'- --gCGCcgGCGUGUGCucgaGGCGCCgcgcgacgcGUCCAGc -3' miRNA: 3'- ugaGCG--CGCACAUG----UCGCGG---------UAGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 105712 | 0.66 | 0.845867 |
Target: 5'- gGC-CGCGCGccucgACGGCGCCGUgCGc -3' miRNA: 3'- -UGaGCGCGCaca--UGUCGCGGUAgGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 83131 | 0.66 | 0.845867 |
Target: 5'- aGCUCGgGCGccuUGUAC-GCGCCAaagagggugUCCuGg -3' miRNA: 3'- -UGAGCgCGC---ACAUGuCGCGGU---------AGGuC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 132794 | 0.66 | 0.853023 |
Target: 5'- -gUCGCugaugagGCGcugGUACAGCGC-GUCCGGg -3' miRNA: 3'- ugAGCG-------CGCa--CAUGUCGCGgUAGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 21968 | 0.66 | 0.853808 |
Target: 5'- -aUCG-GCGUgGUGCGGCGCCGg-CAGc -3' miRNA: 3'- ugAGCgCGCA-CAUGUCGCGGUagGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 74131 | 0.66 | 0.853808 |
Target: 5'- -gUUGCGCGgGUGCAGCgggugccggggGUCGUCCGu -3' miRNA: 3'- ugAGCGCGCaCAUGUCG-----------CGGUAGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 50014 | 0.66 | 0.853808 |
Target: 5'- cGCgCGCGCGgcccGcGCGGCGCCc-CCGGg -3' miRNA: 3'- -UGaGCGCGCa---CaUGUCGCGGuaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 22787 | 0.66 | 0.861547 |
Target: 5'- cCUCGCGCacGUGCuGgGCCGUCUc- -3' miRNA: 3'- uGAGCGCGcaCAUGuCgCGGUAGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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