Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 3' | -56.8 | NC_006151.1 | + | 17339 | 0.68 | 0.747371 |
Target: 5'- aGCUCGUGCGUcucgguggugauGUagaACGGCGCCGUggggUCGGa -3' miRNA: 3'- -UGAGCGCGCA------------CA---UGUCGCGGUA----GGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 124850 | 0.68 | 0.747371 |
Target: 5'- cGCg-GCGCGUGUGCAGC-CUggCCAa -3' miRNA: 3'- -UGagCGCGCACAUGUCGcGGuaGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 97989 | 0.68 | 0.737626 |
Target: 5'- uCUUGCcgggcgGCGUGgccgcguagGCGGCGCCggCCAGg -3' miRNA: 3'- uGAGCG------CGCACa--------UGUCGCGGuaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 82524 | 0.68 | 0.737626 |
Target: 5'- cGCggaugCGCGUGUcGUugAGCGCCc-CCAGc -3' miRNA: 3'- -UGa----GCGCGCA-CAugUCGCGGuaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 58735 | 0.69 | 0.727788 |
Target: 5'- cGCUCGCGuCGc--GCAGCGCCGcggCCAc -3' miRNA: 3'- -UGAGCGC-GCacaUGUCGCGGUa--GGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 95603 | 0.69 | 0.72383 |
Target: 5'- uACUCGCGCGcaaagucgggcccGUGCAGCGagg-CCAGg -3' miRNA: 3'- -UGAGCGCGCa------------CAUGUCGCgguaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 62047 | 0.69 | 0.717868 |
Target: 5'- cGC-CGCGUGgcgGUGCAcgcgcGCGCCGUCguGa -3' miRNA: 3'- -UGaGCGCGCa--CAUGU-----CGCGGUAGguC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 67509 | 0.69 | 0.717868 |
Target: 5'- gGCUCGCGUccggGUcCAGgGCCA-CCAGg -3' miRNA: 3'- -UGAGCGCGca--CAuGUCgCGGUaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 69419 | 0.69 | 0.717868 |
Target: 5'- aGCUCGuCGCGccagGCGGCGCCG-CCGc -3' miRNA: 3'- -UGAGC-GCGCaca-UGUCGCGGUaGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 52069 | 0.69 | 0.707874 |
Target: 5'- --aCGaGCGUGUagcuguccgucuGCAGCGCCGUCgAGa -3' miRNA: 3'- ugaGCgCGCACA------------UGUCGCGGUAGgUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 135756 | 0.69 | 0.687701 |
Target: 5'- uCUCGUacGCGUGggACGGCGCCGggCUGGa -3' miRNA: 3'- uGAGCG--CGCACa-UGUCGCGGUa-GGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 94041 | 0.69 | 0.677541 |
Target: 5'- cGCUCGCGCGcc-GCGGCGUCG-CCGc -3' miRNA: 3'- -UGAGCGCGCacaUGUCGCGGUaGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 64000 | 0.69 | 0.677541 |
Target: 5'- uCUgCGUGCG-GUGCGGCGCCAggcgCCc- -3' miRNA: 3'- uGA-GCGCGCaCAUGUCGCGGUa---GGuc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 71813 | 0.7 | 0.667344 |
Target: 5'- aGCUCGCGCGU----GGCGCUGcCCAGc -3' miRNA: 3'- -UGAGCGCGCAcaugUCGCGGUaGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 94752 | 0.7 | 0.666322 |
Target: 5'- cACUCGCGCGgaaACAgGCGCCGcagcgucUCCAu -3' miRNA: 3'- -UGAGCGCGCacaUGU-CGCGGU-------AGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 130791 | 0.7 | 0.657117 |
Target: 5'- -gUCGCGCGUccagcuggcGUAC-GCGgCGUCCGGg -3' miRNA: 3'- ugAGCGCGCA---------CAUGuCGCgGUAGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 139589 | 0.7 | 0.646871 |
Target: 5'- gGCUCGCGCccccccgaGCGGCGgcCCGUCCGGg -3' miRNA: 3'- -UGAGCGCGcaca----UGUCGC--GGUAGGUC- -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 130727 | 0.7 | 0.636613 |
Target: 5'- gGCcCGCGCGgccgcgGcGCAGCGCCAcCCAc -3' miRNA: 3'- -UGaGCGCGCa-----CaUGUCGCGGUaGGUc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 8820 | 0.7 | 0.636613 |
Target: 5'- uCUcCGCGUGUGUGCGcGCGCCucUCCc- -3' miRNA: 3'- uGA-GCGCGCACAUGU-CGCGGu-AGGuc -5' |
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29557 | 3' | -56.8 | NC_006151.1 | + | 96326 | 0.7 | 0.632508 |
Target: 5'- gGC-CGCGCGcGUAgAGCGCCGgguaggccucccgCCAGa -3' miRNA: 3'- -UGaGCGCGCaCAUgUCGCGGUa------------GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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