miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29558 3' -55.8 NC_006151.1 + 6273 0.82 0.173562
Target:  5'- cGCGAugcccuCUUCcUCGGCCGCGGCGGcGGCCg -3'
miRNA:   3'- -UGCU------GAAGuAGUCGGCGCUGCU-CCGG- -5'
29558 3' -55.8 NC_006151.1 + 64535 0.81 0.217152
Target:  5'- cGCGGCcgCGUCGGggGCGGCGAGGCCg -3'
miRNA:   3'- -UGCUGaaGUAGUCggCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 57495 0.8 0.23937
Target:  5'- gGCGACgcgCAcgcgcUCGGCCGCGGCGGcggcGGCCg -3'
miRNA:   3'- -UGCUGaa-GU-----AGUCGGCGCUGCU----CCGG- -5'
29558 3' -55.8 NC_006151.1 + 84811 0.8 0.245213
Target:  5'- gGCGACcg---CGGCCGCgGACGGGGCCg -3'
miRNA:   3'- -UGCUGaaguaGUCGGCG-CUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 102404 0.78 0.303219
Target:  5'- cGCGGCgcgcgUCGcgCGGcCCGCGaACGAGGCCa -3'
miRNA:   3'- -UGCUGa----AGUa-GUC-GGCGC-UGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 123908 0.78 0.324771
Target:  5'- uGCGGCgcgg-CGGCCGUGACGcGGGCCg -3'
miRNA:   3'- -UGCUGaaguaGUCGGCGCUGC-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 40565 0.77 0.332203
Target:  5'- aGCGGCggCggCGGCCGCGGCGgaGGGCUc -3'
miRNA:   3'- -UGCUGaaGuaGUCGGCGCUGC--UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 66786 0.77 0.347441
Target:  5'- gACGGCgg---CGGCgGCGGCGGGGCCc -3'
miRNA:   3'- -UGCUGaaguaGUCGgCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 12745 0.77 0.347441
Target:  5'- cCGuCUUCAUC-GCCGCGGagggcuggcuCGAGGCCa -3'
miRNA:   3'- uGCuGAAGUAGuCGGCGCU----------GCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 104912 0.77 0.355246
Target:  5'- gGCGGCggCGcgCGaCCGCGACGGGGCCc -3'
miRNA:   3'- -UGCUGaaGUa-GUcGGCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 96220 0.77 0.371221
Target:  5'- gUGGCgg---CGGCCGCGGCGAGGCg -3'
miRNA:   3'- uGCUGaaguaGUCGGCGCUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 29593 0.77 0.371221
Target:  5'- gGCGGCUg---CGGCCGCGGCGgcggGGGCUg -3'
miRNA:   3'- -UGCUGAaguaGUCGGCGCUGC----UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 118878 0.76 0.396088
Target:  5'- aGCGGCggCG-CGGCgGCGACGcGGCCg -3'
miRNA:   3'- -UGCUGaaGUaGUCGgCGCUGCuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 37550 0.76 0.396088
Target:  5'- uGCG-CcUCAUCuacagcggGGCCGcCGGCGAGGCCa -3'
miRNA:   3'- -UGCuGaAGUAG--------UCGGC-GCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 105235 0.76 0.403754
Target:  5'- aGCGGCUga--CGGCCGCcgaggucgccuggGACGAGGCCu -3'
miRNA:   3'- -UGCUGAaguaGUCGGCG-------------CUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 77775 0.76 0.404612
Target:  5'- -gGGCUUCGUgUAcGCCGUGaACGAGGCCu -3'
miRNA:   3'- ugCUGAAGUA-GU-CGGCGC-UGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 54100 0.75 0.430864
Target:  5'- gGCGGCcaUGUCGGCUGCGACGGcGGCg -3'
miRNA:   3'- -UGCUGaaGUAGUCGGCGCUGCU-CCGg -5'
29558 3' -55.8 NC_006151.1 + 3995 0.75 0.458089
Target:  5'- cGCGGCcaCGUUGGCCGgGGCGAagagGGCCg -3'
miRNA:   3'- -UGCUGaaGUAGUCGGCgCUGCU----CCGG- -5'
29558 3' -55.8 NC_006151.1 + 78153 0.75 0.458089
Target:  5'- gACGACgccUCggCcGCCGUGGuCGAGGCCg -3'
miRNA:   3'- -UGCUGa--AGuaGuCGGCGCU-GCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 23034 0.74 0.495761
Target:  5'- gGCGGCgaagaagCGggCGGCCGCGGCGAGcCCa -3'
miRNA:   3'- -UGCUGaa-----GUa-GUCGGCGCUGCUCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.