miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29558 3' -55.8 NC_006151.1 + 648 0.7 0.716935
Target:  5'- cCGGCUUCcggggcgCGGCCGgGGCG-GGCUc -3'
miRNA:   3'- uGCUGAAGua-----GUCGGCgCUGCuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 2332 0.66 0.914506
Target:  5'- gGCGGCcucggCGUCGggcuccagcagcGCCGCGGCGcagaAGGCg -3'
miRNA:   3'- -UGCUGaa---GUAGU------------CGGCGCUGC----UCCGg -5'
29558 3' -55.8 NC_006151.1 + 2393 0.67 0.881667
Target:  5'- -aGGCccUCGg-GGCCGCGgagcucgGCGAGGCCc -3'
miRNA:   3'- ugCUGa-AGUagUCGGCGC-------UGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 3090 0.66 0.895915
Target:  5'- gGCGGCgagCAgCGccgagaggccGCCGCGGCGcgggucccAGGCCg -3'
miRNA:   3'- -UGCUGaa-GUaGU----------CGGCGCUGC--------UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 3251 0.67 0.887212
Target:  5'- gGCGGCggagcggggcgCcgCGGCgCGCGGCGAugugcgccagggcGGCCg -3'
miRNA:   3'- -UGCUGaa---------GuaGUCG-GCGCUGCU-------------CCGG- -5'
29558 3' -55.8 NC_006151.1 + 3412 0.67 0.87526
Target:  5'- gGCGugUgggucUCGcCGGCCGgGACGcGGCg -3'
miRNA:   3'- -UGCugA-----AGUaGUCGGCgCUGCuCCGg -5'
29558 3' -55.8 NC_006151.1 + 3995 0.75 0.458089
Target:  5'- cGCGGCcaCGUUGGCCGgGGCGAagagGGCCg -3'
miRNA:   3'- -UGCUGaaGUAGUCGGCgCUGCU----CCGG- -5'
29558 3' -55.8 NC_006151.1 + 4544 0.67 0.882368
Target:  5'- gGCGGCcauggCGUCcccgaugugcGGCaGCGGCGGGGUCa -3'
miRNA:   3'- -UGCUGaa---GUAG----------UCGgCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 4777 0.68 0.818902
Target:  5'- -aGACgggCAcgggccCGGCCGCGGCGcgguagcGGGCCg -3'
miRNA:   3'- ugCUGaa-GUa-----GUCGGCGCUGC-------UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 5080 0.7 0.70697
Target:  5'- -gGGCcgCGg-GGCCGCGGCGGGcGCCg -3'
miRNA:   3'- ugCUGaaGUagUCGGCGCUGCUC-CGG- -5'
29558 3' -55.8 NC_006151.1 + 5322 0.7 0.746359
Target:  5'- aGCuGCUgaagCcgCGGCCGCGGCGgaGGGCg -3'
miRNA:   3'- -UGcUGAa---GuaGUCGGCGCUGC--UCCGg -5'
29558 3' -55.8 NC_006151.1 + 6066 0.66 0.902345
Target:  5'- cACGAUcUCGcCcgAGCCcCGGCGGGGCUg -3'
miRNA:   3'- -UGCUGaAGUaG--UCGGcGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 6124 0.72 0.635941
Target:  5'- gGCGGCcUCGUggcuccggccgCGGCCGCGAgGAcggcGGCCu -3'
miRNA:   3'- -UGCUGaAGUA-----------GUCGGCGCUgCU----CCGG- -5'
29558 3' -55.8 NC_006151.1 + 6174 0.66 0.908543
Target:  5'- gGCGGCgUCGUCggagaagaGGCCGCc-CG-GGCCg -3'
miRNA:   3'- -UGCUGaAGUAG--------UCGGCGcuGCuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 6273 0.82 0.173562
Target:  5'- cGCGAugcccuCUUCcUCGGCCGCGGCGGcGGCCg -3'
miRNA:   3'- -UGCU------GAAGuAGUCGGCGCUGCU-CCGG- -5'
29558 3' -55.8 NC_006151.1 + 7110 0.69 0.755979
Target:  5'- uGCGGC--CAUCuuGGCCGCGGCGc-GCCa -3'
miRNA:   3'- -UGCUGaaGUAG--UCGGCGCUGCucCGG- -5'
29558 3' -55.8 NC_006151.1 + 8474 0.66 0.914506
Target:  5'- -gGACggaUgGUCGGUCG-GACGGGGCg -3'
miRNA:   3'- ugCUGa--AgUAGUCGGCgCUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 9470 0.69 0.784149
Target:  5'- cGCGuccGCUUCGgccccccgCGGCCGCGgcgugggagaGCGGGGCg -3'
miRNA:   3'- -UGC---UGAAGUa-------GUCGGCGC----------UGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 11225 0.7 0.736639
Target:  5'- -aGGCUUC-UCccgGGCCGCGA--GGGCCg -3'
miRNA:   3'- ugCUGAAGuAG---UCGGCGCUgcUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 11870 0.66 0.914506
Target:  5'- uCGACUcgCGUC-GCgGCGAUucGGGCCg -3'
miRNA:   3'- uGCUGAa-GUAGuCGgCGCUGc-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.