miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29558 3' -55.8 NC_006151.1 + 142285 0.67 0.87526
Target:  5'- gGCGGCcagacCGGCCGgGACGAGaGCg -3'
miRNA:   3'- -UGCUGaaguaGUCGGCgCUGCUC-CGg -5'
29558 3' -55.8 NC_006151.1 + 142242 0.73 0.544699
Target:  5'- cGCGACgaggCGUCGGUcauCGCGGCGAGGa- -3'
miRNA:   3'- -UGCUGaa--GUAGUCG---GCGCUGCUCCgg -5'
29558 3' -55.8 NC_006151.1 + 141630 0.71 0.676731
Target:  5'- gGCGggucGCUgCcgCGGCggCGCGGCGGGGCCc -3'
miRNA:   3'- -UGC----UGAaGuaGUCG--GCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 139909 0.71 0.656375
Target:  5'- gACGGCUUCcgC-GCCGCGGgcucgucgcCGuGGGCCg -3'
miRNA:   3'- -UGCUGAAGuaGuCGGCGCU---------GC-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 139605 0.69 0.755979
Target:  5'- aGCGGCggccCGUcCGGgCGCGGCugGGGGCCa -3'
miRNA:   3'- -UGCUGaa--GUA-GUCgGCGCUG--CUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 139517 0.68 0.819762
Target:  5'- aGCGGCaaCAgCAGCgGCaGCGAGGCg -3'
miRNA:   3'- -UGCUGaaGUaGUCGgCGcUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 138981 0.69 0.754064
Target:  5'- cGCGACgcgccgcgccgCGcUCAGCCGCGaccuccGCGAGGaCCc -3'
miRNA:   3'- -UGCUGaa---------GU-AGUCGGCGC------UGCUCC-GG- -5'
29558 3' -55.8 NC_006151.1 + 137911 0.66 0.895915
Target:  5'- uCGACggCggCGGCUGCcACGGGcGCCu -3'
miRNA:   3'- uGCUGaaGuaGUCGGCGcUGCUC-CGG- -5'
29558 3' -55.8 NC_006151.1 + 137178 0.68 0.811093
Target:  5'- gGCGGCgcagauguaCGUgAGCCGCcACGAGGUg -3'
miRNA:   3'- -UGCUGaa-------GUAgUCGGCGcUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 137130 0.66 0.920232
Target:  5'- cGCGACggCG-CGG-CGCGACGcGGCg -3'
miRNA:   3'- -UGCUGaaGUaGUCgGCGCUGCuCCGg -5'
29558 3' -55.8 NC_006151.1 + 135894 0.71 0.646164
Target:  5'- cCGugUUCGUCGccGCCGCGACcccGGCg -3'
miRNA:   3'- uGCugAAGUAGU--CGGCGCUGcu-CCGg -5'
29558 3' -55.8 NC_006151.1 + 135770 0.68 0.82826
Target:  5'- gACGGCgcCG--GGCUG-GACGAGGCCu -3'
miRNA:   3'- -UGCUGaaGUagUCGGCgCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 135496 0.7 0.696941
Target:  5'- gGCGGCgcg--CGGCCuCGGcCGAGGCCa -3'
miRNA:   3'- -UGCUGaaguaGUCGGcGCU-GCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 134774 0.71 0.655355
Target:  5'- cGCGGCUUCGgcUCcacgggccugugaGGCCGCGGCGGcccGcGCCg -3'
miRNA:   3'- -UGCUGAAGU--AG-------------UCGGCGCUGCU---C-CGG- -5'
29558 3' -55.8 NC_006151.1 + 134740 0.68 0.83658
Target:  5'- -gGACUUUGUCgccccgagcAGCgCGCG-CGGGGCCn -3'
miRNA:   3'- ugCUGAAGUAG---------UCG-GCGCuGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 134110 0.68 0.83658
Target:  5'- gGCGGCUgcUgGUguGCCG-GAgucCGGGGCCg -3'
miRNA:   3'- -UGCUGA--AgUAguCGGCgCU---GCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 133950 0.67 0.882368
Target:  5'- cGCGACUccUCGcgCAGCaGCGGCaGcGGCCc -3'
miRNA:   3'- -UGCUGA--AGUa-GUCGgCGCUG-CuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 133694 0.69 0.784149
Target:  5'- gGCGGucUCGUCGGCgGCGACccGGGUCu -3'
miRNA:   3'- -UGCUgaAGUAGUCGgCGCUGc-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 132622 0.68 0.844714
Target:  5'- uCGACgcucgCGUCcGCCGuCGGCGcccggaccuGGGCCg -3'
miRNA:   3'- uGCUGaa---GUAGuCGGC-GCUGC---------UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 132088 0.67 0.860398
Target:  5'- uCGGCgcCGUCcuCCuCGAUGAGGCCg -3'
miRNA:   3'- uGCUGaaGUAGucGGcGCUGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.