miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 41740 0.68 0.985552
Target:  5'- aUGAGauCCGugGGGACCggcgUCACGUCCg -3'
miRNA:   3'- cGCUC--GGU--UUCUGGaacaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 42686 0.69 0.976535
Target:  5'- uGCGAGCCGGAGACggagacaaUCACcGUCUu -3'
miRNA:   3'- -CGCUCGGUUUCUGgaaca---AGUG-CAGG- -5'
29561 3' -49.6 NC_006151.1 + 46388 0.66 0.998195
Target:  5'- gGCGAGCCccgauGAGccACCagggUGUgaacuauaucgaCACGUCCg -3'
miRNA:   3'- -CGCUCGGu----UUC--UGGa---ACAa-----------GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 49036 0.67 0.993531
Target:  5'- cCGGGCCAGGcccacgggcuGGCCUUca--GCGUCCg -3'
miRNA:   3'- cGCUCGGUUU----------CUGGAAcaagUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 50253 0.71 0.945449
Target:  5'- uGCGGcGCCAuGAGcACCUUcGgacgCGCGUCCg -3'
miRNA:   3'- -CGCU-CGGU-UUC-UGGAA-Caa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 53487 0.67 0.995905
Target:  5'- aGCGAGCCGuggcacgcgAAGGCCagGUgcuccgccgCGCGcCCc -3'
miRNA:   3'- -CGCUCGGU---------UUCUGGaaCAa--------GUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 58262 0.68 0.988776
Target:  5'- cGCGGGCCGcAGcACCgucucGcgCACGUCa -3'
miRNA:   3'- -CGCUCGGUuUC-UGGaa---CaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 58512 0.67 0.99253
Target:  5'- cGCGGGCC---GGCCUcGUcCuCGUCCu -3'
miRNA:   3'- -CGCUCGGuuuCUGGAaCAaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 62181 0.67 0.994421
Target:  5'- gGCGgaGGCCGcccuGGCCgUGUUCACG-CUg -3'
miRNA:   3'- -CGC--UCGGUuu--CUGGaACAAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 63215 0.73 0.900488
Target:  5'- uCGAGCuCAAAGuCCUcGaaCGCGUCCg -3'
miRNA:   3'- cGCUCG-GUUUCuGGAaCaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 63426 0.66 0.996458
Target:  5'- gGCGGGCgGcacgucgcacagcGAGGCCagGUcgaGCGUCCg -3'
miRNA:   3'- -CGCUCGgU-------------UUCUGGaaCAag-UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 64517 0.69 0.981664
Target:  5'- cGCGccGCCAAAGGCCgccgcGgcCGCGUCg -3'
miRNA:   3'- -CGCu-CGGUUUCUGGaa---CaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 64962 0.68 0.990162
Target:  5'- uGCGGGCgc-AGGCCgagcgcCACGUCCa -3'
miRNA:   3'- -CGCUCGguuUCUGGaacaa-GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 65746 0.69 0.979449
Target:  5'- -gGAGCCgGGAGGCCUcGUcCcCGUCCc -3'
miRNA:   3'- cgCUCGG-UUUCUGGAaCAaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 65974 0.68 0.990162
Target:  5'- uCGAGCCGGuccucgccGGCCgcgagCGCGUCCu -3'
miRNA:   3'- cGCUCGGUUu-------CUGGaacaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 67147 0.76 0.775725
Target:  5'- cGCGGcGCCAcggcAAGACCUgGUUcCugGUCCc -3'
miRNA:   3'- -CGCU-CGGU----UUCUGGAaCAA-GugCAGG- -5'
29561 3' -49.6 NC_006151.1 + 67858 0.66 0.997049
Target:  5'- gGCGAGCCGGc-GCCgagGUggcgCGCGcgCCa -3'
miRNA:   3'- -CGCUCGGUUucUGGaa-CAa---GUGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 69433 0.69 0.981664
Target:  5'- gGCGGcGCC----GCCgccGUUCGCGUCCu -3'
miRNA:   3'- -CGCU-CGGuuucUGGaa-CAAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 73940 0.77 0.70499
Target:  5'- aGCGAGCCGucGugCgUGcgCAUGUCCc -3'
miRNA:   3'- -CGCUCGGUuuCugGaACaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 73967 0.7 0.971612
Target:  5'- cGCGuGGCCAccguGGCCaUGccCGCGUCCg -3'
miRNA:   3'- -CGC-UCGGUuu--CUGGaACaaGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.