Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 2550 | 0.71 | 0.949914 |
Target: 5'- gGCGGGCCAu-GuCCUUGcagC-CGUCCa -3' miRNA: 3'- -CGCUCGGUuuCuGGAACaa-GuGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 3184 | 0.66 | 0.997049 |
Target: 5'- aGCGGGUCGuaGAGcACCaccacGcgCACGUCCu -3' miRNA: 3'- -CGCUCGGU--UUC-UGGaa---CaaGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 4360 | 0.66 | 0.997914 |
Target: 5'- cGCGGGCgcaGAGGGCCUcGacggUCGCcUCCc -3' miRNA: 3'- -CGCUCGg--UUUCUGGAaCa---AGUGcAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 4807 | 0.68 | 0.987242 |
Target: 5'- aGCGGGCCGc-GGCCUggcGgaCGuCGUCCu -3' miRNA: 3'- -CGCUCGGUuuCUGGAa--CaaGU-GCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 6015 | 0.7 | 0.971612 |
Target: 5'- gGCG-GCCGGGGACCc-GggCuCGUCCu -3' miRNA: 3'- -CGCuCGGUUUCUGGaaCaaGuGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 6480 | 0.75 | 0.813317 |
Target: 5'- gGCGGGCCGAGaGCCUcggUGggUCggGCGUCCg -3' miRNA: 3'- -CGCUCGGUUUcUGGA---ACa-AG--UGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 7209 | 0.68 | 0.991874 |
Target: 5'- aGCGAGCCAAucagaugauuuucggGGAagcuuCCgUGUgCACGUCa -3' miRNA: 3'- -CGCUCGGUU---------------UCU-----GGaACAaGUGCAGg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 10995 | 0.71 | 0.949914 |
Target: 5'- aGCGGGCCGGGGGCCccgGcUCGCccgCCc -3' miRNA: 3'- -CGCUCGGUUUCUGGaa-CaAGUGca-GG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 13473 | 0.66 | 0.998059 |
Target: 5'- cGCGGGCC--GGACCgccccgccgacUCGgGUCCu -3' miRNA: 3'- -CGCUCGGuuUCUGGaaca-------AGUgCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 26359 | 0.66 | 0.997914 |
Target: 5'- gGCGGGCCGcgucGGGGCg-----CGCGUCCc -3' miRNA: 3'- -CGCUCGGU----UUCUGgaacaaGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 27135 | 0.71 | 0.95413 |
Target: 5'- gGCGAuGCCGcgaaaGAGGCg--GUUCACGUCg -3' miRNA: 3'- -CGCU-CGGU-----UUCUGgaaCAAGUGCAGg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 28288 | 0.66 | 0.997914 |
Target: 5'- cGCGGGCCc--GGCUcccccaUUGgccggCGCGUCCc -3' miRNA: 3'- -CGCUCGGuuuCUGG------AACaa---GUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 28848 | 0.66 | 0.997914 |
Target: 5'- cGCGGGCCc--GGCUcccccaUUGgccggCGCGUCCc -3' miRNA: 3'- -CGCUCGGuuuCUGG------AACaa---GUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 28945 | 0.7 | 0.968576 |
Target: 5'- cGUGGGcCCGAGGGCCggaucugaUUGggccacgUCACGUUCg -3' miRNA: 3'- -CGCUC-GGUUUCUGG--------AACa------AGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 34478 | 0.68 | 0.990162 |
Target: 5'- gGCGGGUCc-GGGCUcgagGUUCGgGUCCg -3' miRNA: 3'- -CGCUCGGuuUCUGGaa--CAAGUgCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 35233 | 0.67 | 0.993531 |
Target: 5'- gGCGAGCCGAGauGGCCgc---CGCGggggCCg -3' miRNA: 3'- -CGCUCGGUUU--CUGGaacaaGUGCa---GG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 35983 | 0.71 | 0.935754 |
Target: 5'- cGCG-GCCGAGGAagagGgcaUCGCGUCCg -3' miRNA: 3'- -CGCuCGGUUUCUggaaCa--AGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 40105 | 0.66 | 0.997049 |
Target: 5'- gGCGAGgaCGGGGACUcUGUggagaucgUCGgCGUCCg -3' miRNA: 3'- -CGCUCg-GUUUCUGGaACA--------AGU-GCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 41617 | 0.67 | 0.995209 |
Target: 5'- cGCGccCCGGAaGCCggcgUCACGUCCg -3' miRNA: 3'- -CGCucGGUUUcUGGaacaAGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 41677 | 0.68 | 0.985552 |
Target: 5'- aUGAGauCCGugGGGACCggcgUCACGUCCg -3' miRNA: 3'- cGCUC--GGU--UUCUGGaacaAGUGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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