miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 73940 0.77 0.70499
Target:  5'- aGCGAGCCGucGugCgUGcgCAUGUCCc -3'
miRNA:   3'- -CGCUCGGUuuCugGaACaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 67147 0.76 0.775725
Target:  5'- cGCGGcGCCAcggcAAGACCUgGUUcCugGUCCc -3'
miRNA:   3'- -CGCU-CGGU----UUCUGGAaCAA-GugCAGG- -5'
29561 3' -49.6 NC_006151.1 + 135487 0.76 0.782482
Target:  5'- cGCGGGCCAGGcggcgcgcggccucGGCCgaGgccaUCACGUCCu -3'
miRNA:   3'- -CGCUCGGUUU--------------CUGGaaCa---AGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 6480 0.75 0.813317
Target:  5'- gGCGGGCCGAGaGCCUcggUGggUCggGCGUCCg -3'
miRNA:   3'- -CGCUCGGUUUcUGGA---ACa-AG--UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 136293 0.74 0.839679
Target:  5'- uGCGGGCCcucAAGGACCUgcUGcUCACGUa- -3'
miRNA:   3'- -CGCUCGG---UUUCUGGA--ACaAGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 96143 0.74 0.864205
Target:  5'- cGCGAaaguacgcGUCAAAGACCUcgGgccaCGCGUCCg -3'
miRNA:   3'- -CGCU--------CGGUUUCUGGAa-Caa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 90051 0.73 0.871938
Target:  5'- gGCGAuGCCGAGGcgcGCCUcgGUgcgCACGUUCa -3'
miRNA:   3'- -CGCU-CGGUUUC---UGGAa-CAa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 63215 0.73 0.900488
Target:  5'- uCGAGCuCAAAGuCCUcGaaCGCGUCCg -3'
miRNA:   3'- cGCUCG-GUUUCuGGAaCaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 108377 0.72 0.91928
Target:  5'- -aGAGCCGAAGGCCggUGcaccgccggACGUCCg -3'
miRNA:   3'- cgCUCGGUUUCUGGa-ACaag------UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 114671 0.72 0.92503
Target:  5'- cGUGAGCgccgCGAAGGCCUcGUgcucgaagggCGCGUCCc -3'
miRNA:   3'- -CGCUCG----GUUUCUGGAaCAa---------GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 122619 0.72 0.92503
Target:  5'- uGCGGGCCcucGACCU-GUUCACGcacaaCCu -3'
miRNA:   3'- -CGCUCGGuuuCUGGAaCAAGUGCa----GG- -5'
29561 3' -49.6 NC_006151.1 + 102119 0.72 0.930521
Target:  5'- cGCGGGCCGGAG-CCU-GUUCcccggGCGcgCCg -3'
miRNA:   3'- -CGCUCGGUUUCuGGAaCAAG-----UGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 35983 0.71 0.935754
Target:  5'- cGCG-GCCGAGGAagagGgcaUCGCGUCCg -3'
miRNA:   3'- -CGCuCGGUUUCUggaaCa--AGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 50253 0.71 0.945449
Target:  5'- uGCGGcGCCAuGAGcACCUUcGgacgCGCGUCCg -3'
miRNA:   3'- -CGCU-CGGU-UUC-UGGAA-Caa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 2550 0.71 0.949914
Target:  5'- gGCGGGCCAu-GuCCUUGcagC-CGUCCa -3'
miRNA:   3'- -CGCUCGGUuuCuGGAACaa-GuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 101942 0.71 0.949914
Target:  5'- gGCGAGCCAggAGGACCUgagcagCACG-Ca -3'
miRNA:   3'- -CGCUCGGU--UUCUGGAacaa--GUGCaGg -5'
29561 3' -49.6 NC_006151.1 + 10995 0.71 0.949914
Target:  5'- aGCGGGCCGGGGGCCccgGcUCGCccgCCc -3'
miRNA:   3'- -CGCUCGGUUUCUGGaa-CaAGUGca-GG- -5'
29561 3' -49.6 NC_006151.1 + 27135 0.71 0.95413
Target:  5'- gGCGAuGCCGcgaaaGAGGCg--GUUCACGUCg -3'
miRNA:   3'- -CGCU-CGGU-----UUCUGgaaCAAGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 133165 0.7 0.968576
Target:  5'- cGCGGGCgu-GGGCCUcGgccaCGCGUCCc -3'
miRNA:   3'- -CGCUCGguuUCUGGAaCaa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 28945 0.7 0.968576
Target:  5'- cGUGGGcCCGAGGGCCggaucugaUUGggccacgUCACGUUCg -3'
miRNA:   3'- -CGCUC-GGUUUCUGG--------AACa------AGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.