miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 15894 0.68 0.514779
Target:  5'- gGGGGACGCGCgccccgaCGCGGCcCGCcgccgccccgugaggCGGGc -3'
miRNA:   3'- -CCCCUGCGCG-------GCGUCGuGCGa--------------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 17323 0.66 0.620468
Target:  5'- cGGGGgGCGCCGCGucagcucGUGCGuCUCGguGGUg -3'
miRNA:   3'- cCCCUgCGCGGCGU-------CGUGC-GAGU--CCA- -5'
29561 5' -62.1 NC_006151.1 + 17400 0.69 0.459695
Target:  5'- cGGGGCGCGUgGC-GCGCgGCagCAGGg -3'
miRNA:   3'- cCCCUGCGCGgCGuCGUG-CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 19126 0.66 0.601746
Target:  5'- cGGGGGCGCGCgcgCGUAGUACcaGUcCAGcGUg -3'
miRNA:   3'- -CCCCUGCGCG---GCGUCGUG--CGaGUC-CA- -5'
29561 5' -62.1 NC_006151.1 + 19389 0.67 0.562629
Target:  5'- uGGGcGugGC-CCGCcGgACGgUCAGGUg -3'
miRNA:   3'- -CCC-CugCGcGGCGuCgUGCgAGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 19443 0.69 0.450817
Target:  5'- uGGGcggcucGCGCuggaGCCGCGGCAC-CUCGGGc -3'
miRNA:   3'- cCCC------UGCG----CGGCGUCGUGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 19512 0.7 0.399628
Target:  5'- cGGGGACGCaGgCGCGGCccaGCacCAGGUc -3'
miRNA:   3'- -CCCCUGCG-CgGCGUCGug-CGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 20134 0.69 0.433348
Target:  5'- gGGGGGCggGCGCCGCgggggcGGCGCGUggaccgcCGGGc -3'
miRNA:   3'- -CCCCUG--CGCGGCG------UCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 20461 0.68 0.524228
Target:  5'- gGGGGugGCGCCGgucccccgggGGgGCGCggGGGUc -3'
miRNA:   3'- -CCCCugCGCGGCg---------UCgUGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 21500 0.76 0.159679
Target:  5'- gGGGGGCGCGggcgucaCCGgGGCGgGCUCGGGc -3'
miRNA:   3'- -CCCCUGCGC-------GGCgUCGUgCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 22328 0.66 0.64514
Target:  5'- cGGGcGACcaGCGCCGCcaauAGCgcugcgagcagcaugGCGCUggCAGGUg -3'
miRNA:   3'- -CCC-CUG--CGCGGCG----UCG---------------UGCGA--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 22828 0.76 0.172264
Target:  5'- aGGGGGCGCGagGCgAGCGCGCUgccCAGGa -3'
miRNA:   3'- -CCCCUGCGCggCG-UCGUGCGA---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 25411 0.69 0.459695
Target:  5'- cGGGGGCGcCGCCGCcccacGCGCGCccgUCAu-- -3'
miRNA:   3'- -CCCCUGC-GCGGCGu----CGUGCG---AGUcca -5'
29561 5' -62.1 NC_006151.1 + 26361 0.7 0.416279
Target:  5'- cGGGcCGCGUCGgGGCGCGCgucccccggCGGGc -3'
miRNA:   3'- cCCCuGCGCGGCgUCGUGCGa--------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 27215 0.75 0.208897
Target:  5'- cGGGGccccGCGCGCCGUGGaCGCGCaccuccUCGGGg -3'
miRNA:   3'- -CCCC----UGCGCGGCGUC-GUGCG------AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 28282 0.66 0.598796
Target:  5'- cGGGGACGCGggcCCGgcucccccauuggcCGGCGCGUcccCGGGg -3'
miRNA:   3'- -CCCCUGCGC---GGC--------------GUCGUGCGa--GUCCa -5'
29561 5' -62.1 NC_006151.1 + 28842 0.66 0.638233
Target:  5'- cGGGGACGCGggcCCGgcucccccauuggcCGGCGCGUccccggaggCGGGUg -3'
miRNA:   3'- -CCCCUGCGC---GGC--------------GUCGUGCGa--------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 29455 0.71 0.330182
Target:  5'- aGGGGACGCGgagggaGCgGGCGCGC-CGGGa -3'
miRNA:   3'- -CCCCUGCGCgg----CG-UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 30760 0.67 0.582121
Target:  5'- cGGGGCGgGg-GCAGCACucagcgaagGCUCAGGg -3'
miRNA:   3'- cCCCUGCgCggCGUCGUG---------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 31015 0.72 0.29562
Target:  5'- aGGGGGuCGcCGCCGCGGCccuCGCggccCGGGa -3'
miRNA:   3'- -CCCCU-GC-GCGGCGUCGu--GCGa---GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.