miRNA display CGI


Results 1 - 20 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 656 0.71 0.330182
Target:  5'- cGGGGCGCgGCCGgGGCGgGCUCcgcGGa -3'
miRNA:   3'- cCCCUGCG-CGGCgUCGUgCGAGu--CCa -5'
29561 5' -62.1 NC_006151.1 + 1848 0.67 0.542357
Target:  5'- aGGGGAccgaggcCGcCGCCGCGG-ACGCagAGGa -3'
miRNA:   3'- -CCCCU-------GC-GCGGCGUCgUGCGagUCCa -5'
29561 5' -62.1 NC_006151.1 + 2015 0.7 0.383409
Target:  5'- aGGGGGCGCcCCGCucAGCGgaGCagCAGGUa -3'
miRNA:   3'- -CCCCUGCGcGGCG--UCGUg-CGa-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 2287 0.72 0.308412
Target:  5'- cGGGGCGC-CCGCGGCggcgacgGCGCcCGGGg -3'
miRNA:   3'- cCCCUGCGcGGCGUCG-------UGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 2580 0.67 0.533742
Target:  5'- uGGGGAgcaCGCGCUGgcgguaGGCGCGCggcggcagCGGGa -3'
miRNA:   3'- -CCCCU---GCGCGGCg-----UCGUGCGa-------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 3141 0.66 0.621455
Target:  5'- cGGGGCGC-CCuCGGCGgGCUCGGc- -3'
miRNA:   3'- cCCCUGCGcGGcGUCGUgCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 3256 0.71 0.328744
Target:  5'- cGGaGcGGgGCGCCGCGGCGCGCggcgaugugcgcCAGGg -3'
miRNA:   3'- -CC-C-CUgCGCGGCGUCGUGCGa-----------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 3432 0.69 0.458803
Target:  5'- cGGGACGCggcggaaGCCGCcgucgGGCGCgggguGCUCGGGc -3'
miRNA:   3'- cCCCUGCG-------CGGCG-----UCGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 3695 0.69 0.442033
Target:  5'- -cGGGCGCGCgGCGcuucuucuuGCGcCGCUCGGGc -3'
miRNA:   3'- ccCCUGCGCGgCGU---------CGU-GCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 3869 0.68 0.5054
Target:  5'- aGGGGGCGCccGCCGCcgccGGCgccgGCGCU-GGGa -3'
miRNA:   3'- -CCCCUGCG--CGGCG----UCG----UGCGAgUCCa -5'
29561 5' -62.1 NC_006151.1 + 4153 0.71 0.337442
Target:  5'- cGGGGAuCGCGUCGCGGaGCGCgagCAGc- -3'
miRNA:   3'- -CCCCU-GCGCGGCGUCgUGCGa--GUCca -5'
29561 5' -62.1 NC_006151.1 + 4258 0.68 0.514779
Target:  5'- aGGGcagcaGGCGCucgaggacGCCGCGGCAgGC-CAGGa -3'
miRNA:   3'- -CCC-----CUGCG--------CGGCGUCGUgCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 4398 0.66 0.621455
Target:  5'- cGGGGGucCGCGgCGCGGCcCGggUAGGc -3'
miRNA:   3'- -CCCCU--GCGCgGCGUCGuGCgaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 5622 0.68 0.476814
Target:  5'- aGGGGGCGcCGCCGCcgccgGGCGCcgagaccggcccgGCggCGGGg -3'
miRNA:   3'- -CCCCUGC-GCGGCG-----UCGUG-------------CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 5860 0.68 0.486869
Target:  5'- gGGGGACgaGCGcCCGgGGC-CGC-CGGGg -3'
miRNA:   3'- -CCCCUG--CGC-GGCgUCGuGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 8242 0.7 0.416279
Target:  5'- cGGGGAgG-GCCGggcCGGCGCGC-CGGGa -3'
miRNA:   3'- -CCCCUgCgCGGC---GUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 13172 0.77 0.138001
Target:  5'- cGGGACGguCGCCGCGGC-CGuCUCGGGg -3'
miRNA:   3'- cCCCUGC--GCGGCGUCGuGC-GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 13397 0.7 0.389036
Target:  5'- cGGGGACGCGCCGgCcaaugggggagccgGGCcCGCgucccCGGGg -3'
miRNA:   3'- -CCCCUGCGCGGC-G--------------UCGuGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 13678 0.76 0.164047
Target:  5'- cGGGGACGCGCCgGCcaauGCGgGCUCccGGGa -3'
miRNA:   3'- -CCCCUGCGCGG-CGu---CGUgCGAG--UCCa -5'
29561 5' -62.1 NC_006151.1 + 13957 0.7 0.38261
Target:  5'- cGGGGACGCGCCGgCcaugggggagccgGGCcCGCgucccCGGGg -3'
miRNA:   3'- -CCCCUGCGCGGC-G-------------UCGuGCGa----GUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.