miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 93449 0.81 0.076991
Target:  5'- cGGGGGuCGcCGCCGCGGgGCGCUaCAGGUc -3'
miRNA:   3'- -CCCCU-GC-GCGGCGUCgUGCGA-GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 31752 0.79 0.107344
Target:  5'- cGGGGACGCGCCuGCGGCggcgggcgcGCGC-CGGGc -3'
miRNA:   3'- -CCCCUGCGCGG-CGUCG---------UGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 130313 0.77 0.134605
Target:  5'- cGGaGCGCGCgCGCcGCGCGCUCGGGg -3'
miRNA:   3'- cCCcUGCGCG-GCGuCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 13172 0.77 0.138001
Target:  5'- cGGGACGguCGCCGCGGC-CGuCUCGGGg -3'
miRNA:   3'- cCCCUGC--GCGGCGUCGuGC-GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 56599 0.77 0.152382
Target:  5'- -cGGACGCGCCccgGCGGCGCGCUCAc-- -3'
miRNA:   3'- ccCCUGCGCGG---CGUCGUGCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 96854 0.76 0.156184
Target:  5'- cGGGGAaacCGCGCCcgccgggcGCGGCGCGCgCGGGg -3'
miRNA:   3'- -CCCCU---GCGCGG--------CGUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 21500 0.76 0.159679
Target:  5'- gGGGGGCGCGggcgucaCCGgGGCGgGCUCGGGc -3'
miRNA:   3'- -CCCCUGCGC-------GGCgUCGUgCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 13678 0.76 0.164047
Target:  5'- cGGGGACGCGCCgGCcaauGCGgGCUCccGGGa -3'
miRNA:   3'- -CCCCUGCGCGG-CGu---CGUgCGAG--UCCa -5'
29561 5' -62.1 NC_006151.1 + 85490 0.76 0.16811
Target:  5'- -aGGACGCGCCGCugcuGCGCGC-CAcGGUg -3'
miRNA:   3'- ccCCUGCGCGGCGu---CGUGCGaGU-CCA- -5'
29561 5' -62.1 NC_006151.1 + 22828 0.76 0.172264
Target:  5'- aGGGGGCGCGagGCgAGCGCGCUgccCAGGa -3'
miRNA:   3'- -CCCCUGCGCggCG-UCGUGCGA---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 64303 0.76 0.172264
Target:  5'- -cGGGCGUGCCGCAGCGCGCcgugCuGGc -3'
miRNA:   3'- ccCCUGCGCGGCGUCGUGCGa---GuCCa -5'
29561 5' -62.1 NC_006151.1 + 57746 0.75 0.185278
Target:  5'- --cGGCGCGCCGCAGC-CGCUCGuGGc -3'
miRNA:   3'- cccCUGCGCGGCGUCGuGCGAGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 129214 0.75 0.194429
Target:  5'- cGGGGGC-CGCCagcagGCAGCugGCgCGGGUg -3'
miRNA:   3'- -CCCCUGcGCGG-----CGUCGugCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 59675 0.75 0.203974
Target:  5'- cGGGGACGCGCgCGCacgcgccgAGCACgGC-CAGGc -3'
miRNA:   3'- -CCCCUGCGCG-GCG--------UCGUG-CGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 27215 0.75 0.208897
Target:  5'- cGGGGccccGCGCGCCGUGGaCGCGCaccuccUCGGGg -3'
miRNA:   3'- -CCCC----UGCGCGGCGUC-GUGCG------AGUCCa -5'
29561 5' -62.1 NC_006151.1 + 59857 0.74 0.21905
Target:  5'- gGGGGGCGCagcuGCCGCAGCAcCGCUgGcuGGc -3'
miRNA:   3'- -CCCCUGCG----CGGCGUCGU-GCGAgU--CCa -5'
29561 5' -62.1 NC_006151.1 + 65716 0.74 0.235069
Target:  5'- aGGGGGCcucGCGCgGCuGCGCGCggccCAGGa -3'
miRNA:   3'- -CCCCUG---CGCGgCGuCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 69763 0.74 0.240622
Target:  5'- cGGGGccACGCGCCGCGcGCGCGCgUAGu- -3'
miRNA:   3'- -CCCC--UGCGCGGCGU-CGUGCGaGUCca -5'
29561 5' -62.1 NC_006151.1 + 78538 0.74 0.240622
Target:  5'- cGGGGGCcuCGCCGCcgacgacgaAGCACGCcCGGGa -3'
miRNA:   3'- -CCCCUGc-GCGGCG---------UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 141632 0.73 0.246285
Target:  5'- cGGGuCGCuGCCGCGGCGgCGCggCGGGg -3'
miRNA:   3'- cCCCuGCG-CGGCGUCGU-GCGa-GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.