miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 3' -55.4 NC_006151.1 + 112557 0.66 0.915811
Target:  5'- cCCACGUgauGCUGGAcgaggaGGACUCGCccGCg- -3'
miRNA:   3'- uGGUGCA---CGACCUa-----CUUGAGCG--CGag -5'
29562 3' -55.4 NC_006151.1 + 94060 0.66 0.915811
Target:  5'- cGCCGCGgaacagcaucaGCUGGAUGGcGCUguacaCGCGCg- -3'
miRNA:   3'- -UGGUGCa----------CGACCUACU-UGA-----GCGCGag -5'
29562 3' -55.4 NC_006151.1 + 82012 0.66 0.903549
Target:  5'- gGCCGCGUgcgccgccgacaGCUGGgcGAgguAgUCGuCGCUCu -3'
miRNA:   3'- -UGGUGCA------------CGACCuaCU---UgAGC-GCGAG- -5'
29562 3' -55.4 NC_006151.1 + 103897 0.66 0.903549
Target:  5'- cACCugGcGCUGGAgguGGCgCGCGCg- -3'
miRNA:   3'- -UGGugCaCGACCUac-UUGaGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 71023 0.66 0.897055
Target:  5'- cGCCGCGaGCUcGcgGAGCUgCGCGC-Cg -3'
miRNA:   3'- -UGGUGCaCGAcCuaCUUGA-GCGCGaG- -5'
29562 3' -55.4 NC_006151.1 + 104017 0.66 0.897055
Target:  5'- cGCCGCGcgGC-GGAggugGAGCgCGCGCa- -3'
miRNA:   3'- -UGGUGCa-CGaCCUa---CUUGaGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 136783 0.66 0.890324
Target:  5'- gGCUACGUGgaGGAccGcACguacgcCGCGCUCg -3'
miRNA:   3'- -UGGUGCACgaCCUa-CuUGa-----GCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 20764 0.66 0.890324
Target:  5'- cACCGCGgcggacgcgcGCcGGgcGAgcgGCUCGCGCUUg -3'
miRNA:   3'- -UGGUGCa---------CGaCCuaCU---UGAGCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 51373 0.66 0.888258
Target:  5'- gGCC-CGUGCUGGAUcgugacgcggcccgGGGCgagCGCGUc- -3'
miRNA:   3'- -UGGuGCACGACCUA--------------CUUGa--GCGCGag -5'
29562 3' -55.4 NC_006151.1 + 122390 0.66 0.883358
Target:  5'- cGCCGCGggcgcgcGCUGGcgGcGCUCGcCGC-Cg -3'
miRNA:   3'- -UGGUGCa------CGACCuaCuUGAGC-GCGaG- -5'
29562 3' -55.4 NC_006151.1 + 136963 0.66 0.883358
Target:  5'- cGCCGCcUGCUGGAgcUGGccGC-CGCGC-Cg -3'
miRNA:   3'- -UGGUGcACGACCU--ACU--UGaGCGCGaG- -5'
29562 3' -55.4 NC_006151.1 + 125310 0.67 0.876162
Target:  5'- cACCACGgGCUcGGcgGAGUUUGCGCg- -3'
miRNA:   3'- -UGGUGCaCGA-CCuaCUUGAGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 100669 0.67 0.876162
Target:  5'- cGCgGCGUGCUGGc---GCUCGuCGCg- -3'
miRNA:   3'- -UGgUGCACGACCuacuUGAGC-GCGag -5'
29562 3' -55.4 NC_006151.1 + 3823 0.67 0.876162
Target:  5'- gACUugGUGCUGGcgGGGCUggaGgGCcCg -3'
miRNA:   3'- -UGGugCACGACCuaCUUGAg--CgCGaG- -5'
29562 3' -55.4 NC_006151.1 + 77503 0.67 0.868742
Target:  5'- aACUACGUGCgcacgGAGCUgGCGCg- -3'
miRNA:   3'- -UGGUGCACGaccuaCUUGAgCGCGag -5'
29562 3' -55.4 NC_006151.1 + 56225 0.67 0.868742
Target:  5'- cCCugGUGCgccccgaGGAcccgacgGAGUUCGCGCUCu -3'
miRNA:   3'- uGGugCACGa------CCUa------CUUGAGCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 56655 0.67 0.867231
Target:  5'- gGCCGUGUaccGCUGG-UGGACgacggcgccgcgCGCGCUCa -3'
miRNA:   3'- -UGGUGCA---CGACCuACUUGa-----------GCGCGAG- -5'
29562 3' -55.4 NC_006151.1 + 117675 0.67 0.861102
Target:  5'- cACCGCG-GC-GcGAUGAACUUGaacuCGCUCa -3'
miRNA:   3'- -UGGUGCaCGaC-CUACUUGAGC----GCGAG- -5'
29562 3' -55.4 NC_006151.1 + 27175 0.67 0.861102
Target:  5'- cGCCGCGUGUcGGGgcgccaggGGGC-CGCGCa- -3'
miRNA:   3'- -UGGUGCACGaCCUa-------CUUGaGCGCGag -5'
29562 3' -55.4 NC_006151.1 + 72659 0.67 0.856416
Target:  5'- cGCuCGCGUGCUGGAaGcagcccuucagcgggGACUCGuCGCg- -3'
miRNA:   3'- -UG-GUGCACGACCUaC---------------UUGAGC-GCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.