miRNA display CGI


Results 41 - 60 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 5' -66.4 NC_006151.1 + 86081 0.66 0.468044
Target:  5'- cCGcGCGCGCG-CCgCC-GCCGCCauggGGCc -3'
miRNA:   3'- cGCuCGCGCGCaGG-GGcCGGCGG----CCG- -5'
29562 5' -66.4 NC_006151.1 + 141555 0.66 0.468044
Target:  5'- cGCGAGaggguccgGCGCGaUCCUCcGCCGCUccuccccccgGGCg -3'
miRNA:   3'- -CGCUCg-------CGCGC-AGGGGcCGGCGG----------CCG- -5'
29562 5' -66.4 NC_006151.1 + 21506 0.66 0.467179
Target:  5'- cGCGGGCGUcaccgggGCGggcucgggCUUCGGCCgggGCCGGg -3'
miRNA:   3'- -CGCUCGCG-------CGCa-------GGGGCCGG---CGGCCg -5'
29562 5' -66.4 NC_006151.1 + 119191 0.66 0.467179
Target:  5'- cGCGGGCGCcgccgacGCG-CgCaaggaGGgCGCCGGCc -3'
miRNA:   3'- -CGCUCGCG-------CGCaGgGg----CCgGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 39825 0.66 0.45943
Target:  5'- uGCG-GCcCGUcuucGUCUCCugcGGCCGCCGGg -3'
miRNA:   3'- -CGCuCGcGCG----CAGGGG---CCGGCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 5662 0.66 0.45943
Target:  5'- gGCGGGgGaggcuggggaaGCGggCCCCcGCCguGCCGGCg -3'
miRNA:   3'- -CGCUCgCg----------CGCa-GGGGcCGG--CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 37962 0.66 0.45943
Target:  5'- cGCGAGCugGCggacgccuGCGU-CCUGGCCuGCCgcGGCg -3'
miRNA:   3'- -CGCUCG--CG--------CGCAgGGGCCGG-CGG--CCG- -5'
29562 5' -66.4 NC_006151.1 + 70910 0.66 0.45943
Target:  5'- uGCGcugccuGGCGCGCGUgCUgGcGCUGCacgaCGGCg -3'
miRNA:   3'- -CGC------UCGCGCGCAgGGgC-CGGCG----GCCG- -5'
29562 5' -66.4 NC_006151.1 + 135087 0.66 0.45943
Target:  5'- gGCGGGgGCgGCGgggCCgGGCgGgCGGCg -3'
miRNA:   3'- -CGCUCgCG-CGCag-GGgCCGgCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 27581 0.66 0.45943
Target:  5'- gGUGGGUGgGCGaggcUCCCCGacGCCGacCCGGa -3'
miRNA:   3'- -CGCUCGCgCGC----AGGGGC--CGGC--GGCCg -5'
29562 5' -66.4 NC_006151.1 + 51984 0.66 0.45943
Target:  5'- gGCGAGCa-GC-UCCgCGG-UGCCGGCg -3'
miRNA:   3'- -CGCUCGcgCGcAGGgGCCgGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 2933 0.66 0.45943
Target:  5'- cCGAGC-CGCGagcagagguacUCCaCGG-CGCCGGCg -3'
miRNA:   3'- cGCUCGcGCGC-----------AGGgGCCgGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 96009 0.66 0.45943
Target:  5'- cGUGAugGCGCGCaccgccUCCUCGGUggUGCgCGGCa -3'
miRNA:   3'- -CGCU--CGCGCGc-----AGGGGCCG--GCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 84434 0.66 0.45943
Target:  5'- cGCGgcGGCGCGCGgcccauguccCCCCGcGCCauggaCCGcGCg -3'
miRNA:   3'- -CGC--UCGCGCGCa---------GGGGC-CGGc----GGC-CG- -5'
29562 5' -66.4 NC_006151.1 + 74926 0.66 0.45943
Target:  5'- uCGAagccGCGCGCGUCCCUaaaguccacggGGCacaggGCCaGCg -3'
miRNA:   3'- cGCU----CGCGCGCAGGGG-----------CCGg----CGGcCG- -5'
29562 5' -66.4 NC_006151.1 + 57525 0.66 0.45943
Target:  5'- gGCG-GC-CGCcUCCggcgCGGCCGCgGGCa -3'
miRNA:   3'- -CGCuCGcGCGcAGGg---GCCGGCGgCCG- -5'
29562 5' -66.4 NC_006151.1 + 136667 0.66 0.458574
Target:  5'- gGgGAGCGCGCGgCCgCCGccuucuuCCGCCacgugcgGGCg -3'
miRNA:   3'- -CgCUCGCGCGCaGG-GGCc------GGCGG-------CCG- -5'
29562 5' -66.4 NC_006151.1 + 38955 0.66 0.454303
Target:  5'- gGCGcccGGCGCucaccuucgaCCCGGCCGCCcuGGCg -3'
miRNA:   3'- -CGC---UCGCGcgcag-----GGGCCGGCGG--CCG- -5'
29562 5' -66.4 NC_006151.1 + 54777 0.66 0.451751
Target:  5'- aCGAcCGCGUGcagcuguacuacgagCCCCGGCa-CCGGCg -3'
miRNA:   3'- cGCUcGCGCGCa--------------GGGGCCGgcGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 95119 0.66 0.450902
Target:  5'- gGCGAugGCG-GCGUugaggCgCCGcGCCGCCGGg -3'
miRNA:   3'- -CGCU--CGCgCGCA-----GgGGC-CGGCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.