miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 5' -66.4 NC_006151.1 + 36243 0.88 0.015302
Target:  5'- aCGAGCcCGgGUCCCCGGCCGCCGGg -3'
miRNA:   3'- cGCUCGcGCgCAGGGGCCGGCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 26372 0.85 0.024226
Target:  5'- -gGGGCGCGCGUCCcCCGGCgGgCGGCg -3'
miRNA:   3'- cgCUCGCGCGCAGG-GGCCGgCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 130960 0.85 0.025491
Target:  5'- cGCGGGCGCGgGggccgguaCCCCGGCCGCCcgGGCu -3'
miRNA:   3'- -CGCUCGCGCgCa-------GGGGCCGGCGG--CCG- -5'
29562 5' -66.4 NC_006151.1 + 81574 0.84 0.028221
Target:  5'- uGCGGagcagggucucGCGCGCGUCgCCggGGCCGCCGGCg -3'
miRNA:   3'- -CGCU-----------CGCGCGCAGgGG--CCGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 88383 0.83 0.035368
Target:  5'- cGCGAGCGCguccgcgGCGUCCgCGGCCGCgaGGCc -3'
miRNA:   3'- -CGCUCGCG-------CGCAGGgGCCGGCGg-CCG- -5'
29562 5' -66.4 NC_006151.1 + 141752 0.81 0.043399
Target:  5'- cGCgGGGCGCGCG-CCCCGGUggcguCGCCGGUu -3'
miRNA:   3'- -CG-CUCGCGCGCaGGGGCCG-----GCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 130266 0.81 0.043399
Target:  5'- gGCcGGCGCGCGgCCCCgaGGCCGCgGGCg -3'
miRNA:   3'- -CGcUCGCGCGCaGGGG--CCGGCGgCCG- -5'
29562 5' -66.4 NC_006151.1 + 91090 0.81 0.044507
Target:  5'- gGCGAGCGCGaagGUCguCCCGGCCG-CGGCg -3'
miRNA:   3'- -CGCUCGCGCg--CAG--GGGCCGGCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 64509 0.8 0.051756
Target:  5'- gGCGGGCGCGCGcCgCCaaaGGCCGCCgcGGCc -3'
miRNA:   3'- -CGCUCGCGCGCaG-GGg--CCGGCGG--CCG- -5'
29562 5' -66.4 NC_006151.1 + 18516 0.8 0.057213
Target:  5'- gGCGAGagcauGCGCGUCCCCGcCCGCguCGGCa -3'
miRNA:   3'- -CGCUCg----CGCGCAGGGGCcGGCG--GCCG- -5'
29562 5' -66.4 NC_006151.1 + 76661 0.8 0.057213
Target:  5'- uGCGGGCGCGUGUgCgCGGUCGCUGGg -3'
miRNA:   3'- -CGCUCGCGCGCAgGgGCCGGCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 123238 0.8 0.057213
Target:  5'- cGCGcacGGCGCGCGUUCUgcgaGGCCGCCGcGCg -3'
miRNA:   3'- -CGC---UCGCGCGCAGGGg---CCGGCGGC-CG- -5'
29562 5' -66.4 NC_006151.1 + 3948 0.79 0.060147
Target:  5'- cGCGGGCucCGCGggCCCgGGCCGCgCGGCg -3'
miRNA:   3'- -CGCUCGc-GCGCa-GGGgCCGGCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 136747 0.79 0.060147
Target:  5'- cCGAGCGuCGCGcgccucgCCCCGGCCaugggcGCCGGCu -3'
miRNA:   3'- cGCUCGC-GCGCa------GGGGCCGG------CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 85364 0.79 0.061668
Target:  5'- cGCGccuGCGCGUgGUCCCCGGCgcgaaCGUCGGCg -3'
miRNA:   3'- -CGCu--CGCGCG-CAGGGGCCG-----GCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 70652 0.79 0.063227
Target:  5'- cGCGAgGCGCcCGUCCUcacgCGcGCCGCCGGCg -3'
miRNA:   3'- -CGCU-CGCGcGCAGGG----GC-CGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 139221 0.79 0.06434
Target:  5'- gGCGAcgcugccgcacaucGCGCGCGUCUCCGGCgCGaCGGCc -3'
miRNA:   3'- -CGCU--------------CGCGCGCAGGGGCCG-GCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 51280 0.79 0.066458
Target:  5'- aCGAGCGCGC--CCUCgggGGCCGCCGGCc -3'
miRNA:   3'- cGCUCGCGCGcaGGGG---CCGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 118878 0.78 0.075248
Target:  5'- aGCGgcGGCGCgGCGgcgaCgCGGCCGCCGGCg -3'
miRNA:   3'- -CGC--UCGCG-CGCag--GgGCCGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 125173 0.78 0.081046
Target:  5'- cGCGAGCucgaGCG-CCUCGGCCucGCCGGCg -3'
miRNA:   3'- -CGCUCGcg--CGCaGGGGCCGG--CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.