miRNA display CGI


Results 1 - 20 of 535 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 5' -66.4 NC_006151.1 + 2108 0.68 0.341554
Target:  5'- aGCGGGC-CGCGgggCCGGCCGUCGccGCc -3'
miRNA:   3'- -CGCUCGcGCGCaggGGCCGGCGGC--CG- -5'
29562 5' -66.4 NC_006151.1 + 2203 0.68 0.373784
Target:  5'- cGCGGGCcggugggucuccacgGCGC--CCCCGGCgG-CGGCg -3'
miRNA:   3'- -CGCUCG---------------CGCGcaGGGGCCGgCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 2365 0.66 0.468044
Target:  5'- gGCGcagaaGGCGCGCaa-CUCGGCCGgCaGGCc -3'
miRNA:   3'- -CGC-----UCGCGCGcagGGGCCGGCgG-CCG- -5'
29562 5' -66.4 NC_006151.1 + 2406 0.66 0.468044
Target:  5'- cGCgGAGCuCgGCGaggCCCCGGCgGCC-GCa -3'
miRNA:   3'- -CG-CUCGcG-CGCa--GGGGCCGgCGGcCG- -5'
29562 5' -66.4 NC_006151.1 + 2456 0.69 0.307426
Target:  5'- aGCGGG-GCGCcgagCCCCcagcgguuGGCCGCgCGGUg -3'
miRNA:   3'- -CGCUCgCGCGca--GGGG--------CCGGCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 2500 0.67 0.423392
Target:  5'- gGCG-GCGCccgcgucaaaguccGgGUCCCCGaGCCcgagcgcggagcGCUGGCg -3'
miRNA:   3'- -CGCuCGCG--------------CgCAGGGGC-CGG------------CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 2653 0.66 0.485515
Target:  5'- cGUGuAGCGCaCGUugUCCUGGCgGCagaGGCg -3'
miRNA:   3'- -CGC-UCGCGcGCA--GGGGCCGgCGg--CCG- -5'
29562 5' -66.4 NC_006151.1 + 2781 0.68 0.3487
Target:  5'- cGCgGAGCuCGCGgcaCCCgGGCCagcGCaCGGCg -3'
miRNA:   3'- -CG-CUCGcGCGCa--GGGgCCGG---CG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 2933 0.66 0.45943
Target:  5'- cCGAGC-CGCGagcagagguacUCCaCGG-CGCCGGCg -3'
miRNA:   3'- cGCUCGcGCGC-----------AGGgGCCgGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 3027 0.66 0.47674
Target:  5'- -gGGGCGCccgguccaGUUCCCGGCCcaggcgugcgaGuCCGGCg -3'
miRNA:   3'- cgCUCGCGcg------CAGGGGCCGG-----------C-GGCCG- -5'
29562 5' -66.4 NC_006151.1 + 3116 0.74 0.14418
Target:  5'- cGCG-GCGCGgGUCCCaGGCCGggcgcggggcgcccUCGGCg -3'
miRNA:   3'- -CGCuCGCGCgCAGGGgCCGGC--------------GGCCG- -5'
29562 5' -66.4 NC_006151.1 + 3269 0.68 0.355951
Target:  5'- cGCG-GCGCGCGgcgaugugcgCCagGGCgGCCGGg -3'
miRNA:   3'- -CGCuCGCGCGCa---------GGggCCGgCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 3409 0.68 0.363308
Target:  5'- cGCGGcGUGUGgGUCUcgCCGGCCGggacgCGGCg -3'
miRNA:   3'- -CGCU-CGCGCgCAGG--GGCCGGCg----GCCG- -5'
29562 5' -66.4 NC_006151.1 + 3681 0.74 0.148709
Target:  5'- -gGGGCG-GCGggCCCCGGgCGCgCGGCg -3'
miRNA:   3'- cgCUCGCgCGCa-GGGGCCgGCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 3724 0.7 0.252696
Target:  5'- uCGGGCGCuGgGU-CCgGGCCGgCGGCg -3'
miRNA:   3'- cGCUCGCG-CgCAgGGgCCGGCgGCCG- -5'
29562 5' -66.4 NC_006151.1 + 3867 0.72 0.206239
Target:  5'- -gGAGgGgGCG-CCCgCcGCCGCCGGCg -3'
miRNA:   3'- cgCUCgCgCGCaGGG-GcCGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 3948 0.79 0.060147
Target:  5'- cGCGGGCucCGCGggCCCgGGCCGCgCGGCg -3'
miRNA:   3'- -CGCUCGc-GCGCa-GGGgCCGGCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 4048 0.7 0.282047
Target:  5'- cGCGGGCGCGgG-CCCCGuccacGCUGUagcgcaccagCGGCg -3'
miRNA:   3'- -CGCUCGCGCgCaGGGGC-----CGGCG----------GCCG- -5'
29562 5' -66.4 NC_006151.1 + 4104 0.69 0.327582
Target:  5'- aCGAGgGCGacagaGUCCgCGGCCuGCCGccGCu -3'
miRNA:   3'- cGCUCgCGCg----CAGGgGCCGG-CGGC--CG- -5'
29562 5' -66.4 NC_006151.1 + 4172 0.66 0.442461
Target:  5'- cGCGAGCaGCGCGgccgucaccUCCUCgaGGCagGCgGGCc -3'
miRNA:   3'- -CGCUCG-CGCGC---------AGGGG--CCGg-CGgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.