miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29563 3' -58.1 NC_006151.1 + 135009 0.66 0.85488
Target:  5'- gCGGGGGCGCGGGgGgGcagcagCGGGGc -3'
miRNA:   3'- -GCCUCUGUGCCCgCgCuaca--GCUCCu -5'
29563 3' -58.1 NC_006151.1 + 16115 0.66 0.847166
Target:  5'- gGGAGAUggGGGUG-GAgacgGUgGAGGGa -3'
miRNA:   3'- gCCUCUGugCCCGCgCUa---CAgCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 12350 0.66 0.847166
Target:  5'- aGGAGGgGCGGggaGCGCGAg--CGGGaGAa -3'
miRNA:   3'- gCCUCUgUGCC---CGCGCUacaGCUC-CU- -5'
29563 3' -58.1 NC_006151.1 + 29672 0.66 0.839264
Target:  5'- aGGGGGgGgGGG-GCGggGUgGGGGAu -3'
miRNA:   3'- gCCUCUgUgCCCgCGCuaCAgCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 1630 0.66 0.839264
Target:  5'- aGGGGAC-CGGGggacCGCGG-GagGAGGAg -3'
miRNA:   3'- gCCUCUGuGCCC----GCGCUaCagCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 137542 0.66 0.839264
Target:  5'- gCGGAcuggGACGCGGGCGUccccGcCGAGGu -3'
miRNA:   3'- -GCCU----CUGUGCCCGCGcua-CaGCUCCu -5'
29563 3' -58.1 NC_006151.1 + 5255 0.66 0.838464
Target:  5'- gCGGGGGCccgggggGCGGaGgGCGAgcggGcCGGGGAg -3'
miRNA:   3'- -GCCUCUG-------UGCC-CgCGCUa---CaGCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 29398 0.66 0.834437
Target:  5'- aGGAGAgGCGGGacCGCGcggagaaggcucgguGUGgccgCGGGGGg -3'
miRNA:   3'- gCCUCUgUGCCC--GCGC---------------UACa---GCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 44835 0.66 0.831183
Target:  5'- uCGG-GAC-CGGGgcgaGCGggGUCGuGGAg -3'
miRNA:   3'- -GCCuCUGuGCCCg---CGCuaCAGCuCCU- -5'
29563 3' -58.1 NC_006151.1 + 4350 0.66 0.831183
Target:  5'- gCGGcgcGGACGCGGGCGCa-----GAGGGc -3'
miRNA:   3'- -GCC---UCUGUGCCCGCGcuacagCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 14126 0.66 0.826251
Target:  5'- gGaGAGGCGCGGaGCGCGccccgagccgaCGAGGAg -3'
miRNA:   3'- gC-CUCUGUGCC-CGCGCuaca-------GCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 10461 0.66 0.822928
Target:  5'- aGGAgGACGCGGcG-GCGGUGaagGAGGAg -3'
miRNA:   3'- gCCU-CUGUGCC-CgCGCUACag-CUCCU- -5'
29563 3' -58.1 NC_006151.1 + 138528 0.66 0.814508
Target:  5'- uCGGGGugAUGGGCGCGuacGcCGGccuGGGc -3'
miRNA:   3'- -GCCUCugUGCCCGCGCua-CaGCU---CCU- -5'
29563 3' -58.1 NC_006151.1 + 18118 0.66 0.814508
Target:  5'- uCGG-GACGgGGGCGCuGggGUCGAa-- -3'
miRNA:   3'- -GCCuCUGUgCCCGCG-CuaCAGCUccu -5'
29563 3' -58.1 NC_006151.1 + 82875 0.66 0.814508
Target:  5'- uGGccgcGGCGCGGGUGgGAggggCGAGGGu -3'
miRNA:   3'- gCCu---CUGUGCCCGCgCUaca-GCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 64347 0.66 0.813657
Target:  5'- gGGAaGCGCGGGCcgucggccccccaGCGcacgGUCGAGGc -3'
miRNA:   3'- gCCUcUGUGCCCG-------------CGCua--CAGCUCCu -5'
29563 3' -58.1 NC_006151.1 + 19511 0.67 0.80593
Target:  5'- uCGGGGACGCaGGCGCGGcccagcaccagGUCcGGGu -3'
miRNA:   3'- -GCCUCUGUGcCCGCGCUa----------CAGcUCCu -5'
29563 3' -58.1 NC_006151.1 + 102705 0.67 0.79632
Target:  5'- gCGGGcGGCGCGGccgagccgaacacGCGCGAcGUCaAGGAg -3'
miRNA:   3'- -GCCU-CUGUGCC-------------CGCGCUaCAGcUCCU- -5'
29563 3' -58.1 NC_006151.1 + 33215 0.67 0.79632
Target:  5'- cCGGAGcACgcggggcgccccgGCGGGCGgGAggggGUcCGGGGGa -3'
miRNA:   3'- -GCCUC-UG-------------UGCCCGCgCUa---CA-GCUCCU- -5'
29563 3' -58.1 NC_006151.1 + 33108 0.67 0.79632
Target:  5'- gGGAGAgGaaggucUGGGCGCGugccgcgggccgaGUGUCGGGcGAg -3'
miRNA:   3'- gCCUCUgU------GCCCGCGC-------------UACAGCUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.