miRNA display CGI


Results 41 - 60 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 5' -57.1 NC_006151.1 + 96947 0.68 0.748089
Target:  5'- gGGCGGGagagacgaUGGGGUgagucacacacGACGCGGAcGCGg -3'
miRNA:   3'- aCCGCCU--------ACUCCAa----------CUGCGUCUcCGC- -5'
29564 5' -57.1 NC_006151.1 + 103991 0.68 0.748089
Target:  5'- aGGCGGccGuGGcgGcCGUGGAGGCGc -3'
miRNA:   3'- aCCGCCuaCuCCaaCuGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 112032 0.68 0.748089
Target:  5'- cGGCGGGagcUGGGGccGGCggGCGGGcGGCGg -3'
miRNA:   3'- aCCGCCU---ACUCCaaCUG--CGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 8473 0.68 0.738393
Target:  5'- aGGaCGGAUGGucGGUcgGACGgGGcGGGCGg -3'
miRNA:   3'- aCC-GCCUACU--CCAa-CUGCgUC-UCCGC- -5'
29564 5' -57.1 NC_006151.1 + 3832 0.68 0.738393
Target:  5'- cUGGCGGGgcugGAGGgcccgGAgcCGgGGAGGCc -3'
miRNA:   3'- -ACCGCCUa---CUCCaa---CU--GCgUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 88821 0.68 0.728604
Target:  5'- cGGUGGgcGAGGgaGGCGUu--GGCGg -3'
miRNA:   3'- aCCGCCuaCUCCaaCUGCGucuCCGC- -5'
29564 5' -57.1 NC_006151.1 + 8085 0.69 0.718733
Target:  5'- gGGCGuGgcGGGGc-GugGCAGAGGgGg -3'
miRNA:   3'- aCCGC-CuaCUCCaaCugCGUCUCCgC- -5'
29564 5' -57.1 NC_006151.1 + 21492 0.69 0.718733
Target:  5'- aGGCGGccGGGGggcgcgGGCGUcaccGGGGCGg -3'
miRNA:   3'- aCCGCCuaCUCCaa----CUGCGu---CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 20129 0.69 0.718733
Target:  5'- gGGCuGGggGGcGGgcGcCGCGGGGGCGg -3'
miRNA:   3'- aCCG-CCuaCU-CCaaCuGCGUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 100440 0.69 0.708787
Target:  5'- cGGCGuGAUGGcGcaGACGaCGGAGGCGc -3'
miRNA:   3'- aCCGC-CUACUcCaaCUGC-GUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 74483 0.69 0.708787
Target:  5'- cGGUacaGGAUGGGGUcgcagucccagaUGA-GCGGGGGCa -3'
miRNA:   3'- aCCG---CCUACUCCA------------ACUgCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 33928 0.69 0.698776
Target:  5'- gGGCGGAUcGAGGcccGCGCGccccgggggcucGGGGCGg -3'
miRNA:   3'- aCCGCCUA-CUCCaacUGCGU------------CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 27955 0.69 0.698776
Target:  5'- gGGUGGGgaggGAGGgggGACGgGGAGGa- -3'
miRNA:   3'- aCCGCCUa---CUCCaa-CUGCgUCUCCgc -5'
29564 5' -57.1 NC_006151.1 + 73044 0.69 0.68871
Target:  5'- gUGGCGcGGUGGGGgu-GCGCGGGGuccGCGu -3'
miRNA:   3'- -ACCGC-CUACUCCaacUGCGUCUC---CGC- -5'
29564 5' -57.1 NC_006151.1 + 31720 0.69 0.678597
Target:  5'- gGGCGGAacGGGgcGugG-AGAGGCGc -3'
miRNA:   3'- aCCGCCUacUCCaaCugCgUCUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 76279 0.69 0.678597
Target:  5'- aGGCGGcguUGAGGgagcGGCGaucGAGGCGc -3'
miRNA:   3'- aCCGCCu--ACUCCaa--CUGCgu-CUCCGC- -5'
29564 5' -57.1 NC_006151.1 + 34626 0.69 0.678597
Target:  5'- gGcGCGGGUGGGGc-GAcCGCGGGGGUc -3'
miRNA:   3'- aC-CGCCUACUCCaaCU-GCGUCUCCGc -5'
29564 5' -57.1 NC_006151.1 + 41074 0.69 0.678597
Target:  5'- gUGGUGGuggGAGGUgGACGguGuuGGUGg -3'
miRNA:   3'- -ACCGCCua-CUCCAaCUGCguCu-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 105017 0.69 0.678597
Target:  5'- -cGCGGAgGAGcuggUGACGCAGGcGGCGc -3'
miRNA:   3'- acCGCCUaCUCca--ACUGCGUCU-CCGC- -5'
29564 5' -57.1 NC_006151.1 + 113054 0.69 0.668446
Target:  5'- cGGCGGAgcgcGAGGacGACGCGuacGAGcGCGc -3'
miRNA:   3'- aCCGCCUa---CUCCaaCUGCGU---CUC-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.